Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_10486-0.10 | OTU DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_10487-1.5 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| Bpl_scaf_10487-1.8 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| Bpl_scaf_10487-2.12 | CYCLINS |
| Bpl_scaf_10487-2.13 | EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN |
| Bpl_scaf_10487-2.20 | |
| Bpl_scaf_10487-2.8 | TRANSFORMER-2-RELATED |
| Bpl_scaf_10487-3.6 | RAD50 |
| Bpl_scaf_10487-4.5 | POU DOMAIN |
| Bpl_scaf_10487-5.3 | |
| Bpl_scaf_10511-0.0 | |
| Bpl_scaf_10519-0.0 | |
| Bpl_scaf_10519-0.18 | |
| Bpl_scaf_10519-0.21 | |
| Bpl_scaf_10533-0.0 | |
| Bpl_scaf_10541-0.3 | |
| Bpl_scaf_10549-0.10 | |
| Bpl_scaf_10549-0.5 | AQUAPORIN |
| Bpl_scaf_10549-0.7 | |
| Bpl_scaf_10549-0.8 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_10550-0.40 | ANKYRIN REPEAT DOMAIN 36-RELATED |
| Bpl_scaf_10550-0.41 | GEO07735P1-RELATED-RELATED |
| Bpl_scaf_10550-0.6 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_10550-0.7 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_10550-0.9 | G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER |
| Bpl_scaf_10550-1.3 | MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED |
| Bpl_scaf_10550-1.9 | |
| Bpl_scaf_10550-3.1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| Bpl_scaf_10550-3.5 | |
| Bpl_scaf_10550-3.6 | G PROTEIN-COUPLED RECEPTOR |
| Bpl_scaf_10550-3.7 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| Bpl_scaf_10550-4.10 | |
| Bpl_scaf_10550-4.11 | |
| Bpl_scaf_10550-5.14 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_10550-5.15 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_10550-5.16 | |
| Bpl_scaf_10550-5.18 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_10550-5.25 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Bpl_scaf_10556-0.16 | TYROSINE-PROTEIN KINASE |
| Bpl_scaf_10556-0.17 | TYROSINE-PROTEIN KINASE |
| Bpl_scaf_1057-0.0 | |
| Bpl_scaf_1057-0.10 | ADIPOLIN |
| Bpl_scaf_1057-0.8 | PROSTAGLANDIN G/H SYNTHASE |
| Bpl_scaf_10574-0.8 | |
| Bpl_scaf_10574-0.9 | SORTING NEXIN |
| Bpl_scaf_10579-0.4 | EPPIN |
| Bpl_scaf_10587-0.0 | |
| Bpl_scaf_10587-0.3 | |
| Bpl_scaf_10588-0.1 | 4.1 G PROTEIN |
| Bpl_scaf_10588-1.2 | HOMEOBOX PROTEIN ARISTALESS |
