Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_10277-12.2 | B-CELL LYMPHOMA/LEUKEMIA 10 |
| Bpl_scaf_10277-12.8 | SJOEGREN SYNDROME NUCLEAR AUTOANTIGEN 1 |
| Bpl_scaf_10277-13.24 | CATION-TRANSPORTING ATPASE-RELATED |
| Bpl_scaf_10277-13.26 | CYTOCHROME P450 508A4-RELATED |
| Bpl_scaf_10277-14.5 | RAP GTPASE-ACTIVATING PROTEIN |
| Bpl_scaf_10277-17.4 | |
| Bpl_scaf_10277-18.6 | BETA1,3-GALACTOSYLTRANSFERASE |
| Bpl_scaf_10277-18.7 | SIMILAR TO PREFERENTIALLY EXPRESSED ANTIGEN IN MELANOMA-LIKE 3 |
| Bpl_scaf_10277-19.0 | |
| Bpl_scaf_10277-19.4 | |
| Bpl_scaf_10277-19.9 | POLYCYSTIN FAMILY MEMBER |
| Bpl_scaf_10277-2.10 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR-RELATED |
| Bpl_scaf_10277-2.11 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR-RELATED |
| Bpl_scaf_10277-3.5 | |
| Bpl_scaf_10277-3.6 | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE |
| Bpl_scaf_10277-4.13 | CYTOKINE RECEPTOR |
| Bpl_scaf_10277-4.14 | MOLTING PROTEIN MLT-4 |
| Bpl_scaf_10277-4.26 | |
| Bpl_scaf_10277-4.3 | N-ACETYLTRANSFERASE-RELATED |
| Bpl_scaf_10277-5.10 | SPINSTER |
| Bpl_scaf_10277-5.11 | |
| Bpl_scaf_10277-6.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_10277-6.15 | DRAB11-RELATED |
| Bpl_scaf_10277-6.17 | DRAB11-RELATED |
| Bpl_scaf_10277-6.2 | |
| Bpl_scaf_10277-6.8 | COILED-COIL DOMAIN-CONTAINING PROTEIN 105 |
| Bpl_scaf_10277-8.10 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED |
| Bpl_scaf_10277-8.25 | ZGC:101858 |
| Bpl_scaf_10277-8.9 | NUCLEAR HORMONE RECEPTOR |
| Bpl_scaf_10277-9.12 | UNC80 |
| Bpl_scaf_10277-9.13 | D-AMINO ACID OXIDASE |
| Bpl_scaf_10277-9.19 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_10280-0.3 | |
| Bpl_scaf_10284-0.1 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_10287-0.2 | PROTEIN ZWILCH HOMOLOG |
| Bpl_scaf_10287-0.6 | RIBOSOMAL PROTEIN S6 KINASE |
| Bpl_scaf_10287-2.12 | MITOGEN-ACTIVATED PROTEIN KINASE |
| Bpl_scaf_10287-2.14 | SPERMATHECAL PHYSIOLOGY VARIANT |
| Bpl_scaf_10287-2.15 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
| Bpl_scaf_10287-2.30 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| Bpl_scaf_10287-3.12 | - |
| Bpl_scaf_10287-3.13 | ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6 |
| Bpl_scaf_10287-3.14 | |
| Bpl_scaf_10287-3.18 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| Bpl_scaf_10287-3.21 | |
| Bpl_scaf_10289-0.5 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_10290-0.6 | |
| Bpl_scaf_10290-0.7 | |
| Bpl_scaf_10292-0.1 | - |
| Bpl_scaf_10296-0.0 |
