About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_10296-0.4
Bpl_scaf_10298-1.10U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4
Bpl_scaf_10298-1.11CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P
Bpl_scaf_10298-1.19PRE-MRNA-SPLICING FACTOR ISY1
Bpl_scaf_10298-1.20UNCHARACTERIZED
Bpl_scaf_10298-1.21
Bpl_scaf_10298-2.6ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8
Bpl_scaf_10298-2.7GLUTATHIONE S-TRANSFERASE
Bpl_scaf_10298-2.8
Bpl_scaf_10298-3.11PROTEIN SIDEKICK
Bpl_scaf_10298-3.12COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER
Bpl_scaf_10298-3.13GLUTATHIONE S-TRANSFERASE
Bpl_scaf_10298-3.6
Bpl_scaf_1031-0.2UPF0183 PROTEIN
Bpl_scaf_10318-0.7METALLOPEPTIDASE M28 FAMILY MEMBER
Bpl_scaf_10332-0.5FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Bpl_scaf_10346-0.4
Bpl_scaf_10347-0.19
Bpl_scaf_10347-0.24
Bpl_scaf_10347-0.26
Bpl_scaf_10347-0.27HELICASE WITH DEATH DOMAIN-RELATED
Bpl_scaf_10347-1.20
Bpl_scaf_10347-1.22EGF-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_10347-1.23
Bpl_scaf_10347-1.24SI:CH211-196P9.1-RELATED
Bpl_scaf_10347-1.25UNCHARACTERIZED
Bpl_scaf_10347-2.3XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
Bpl_scaf_10347-3.1
Bpl_scaf_10347-3.10
Bpl_scaf_10347-3.2
Bpl_scaf_10347-4.122-HYDROXYACYL-COA LYASE
Bpl_scaf_10347-4.13LSM12 HOMOLOG
Bpl_scaf_10347-4.23
Bpl_scaf_10347-4.24
Bpl_scaf_10347-4.9LD33804P
Bpl_scaf_10351-0.0U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN
Bpl_scaf_10362-0.12
Bpl_scaf_10362-0.13
Bpl_scaf_10382-0.3CALCIUM BINDING PROTEINS
Bpl_scaf_10392-0.2MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Bpl_scaf_10405-0.8ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
Bpl_scaf_10415-0.5
Bpl_scaf_10422-0.5LEUCYL-TRNA SYNTHETASE
Bpl_scaf_10435-0.11RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_10456-0.11DNA HELICASE-RELATED
Bpl_scaf_10456-0.6GLYCOSYLTRANSFERASE 14 FAMILY MEMBER
Bpl_scaf_10463-0.6
Bpl_scaf_10463-0.9SI:DKEY-31G6.6
Bpl_scaf_10474-0.6
Bpl_scaf_10486-0.0
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