Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_10094-1.5 | SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL |
| Bpl_scaf_10094-1.9 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
| Bpl_scaf_10095-1.2 | |
| Bpl_scaf_10095-1.7 | LD25575P |
| Bpl_scaf_10095-1.8 | RAN GTPASE-ACTIVATING PROTEIN 1 |
| Bpl_scaf_10095-1.9 | ZINC FINGER PROTEIN DZIP1 |
| Bpl_scaf_10095-2.4 | TROPONIN |
| Bpl_scaf_10095-3.15 | |
| Bpl_scaf_10095-3.4 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_10095-3.8 | |
| Bpl_scaf_10095-3.9 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_10095-5.1 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_10095-6.13 | |
| Bpl_scaf_10095-6.35 | |
| Bpl_scaf_10095-6.36 | |
| Bpl_scaf_10095-6.37 | |
| Bpl_scaf_10095-6.40 | ARYLACETAMIDE DEACETYLASE |
| Bpl_scaf_10095-6.41 | |
| Bpl_scaf_10095-7.11 | |
| Bpl_scaf_10095-7.12 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| Bpl_scaf_10095-8.13 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| Bpl_scaf_10095-8.14 | |
| Bpl_scaf_10095-8.49 | TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR |
| Bpl_scaf_10095-8.8 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| Bpl_scaf_10098-0.0 | LEUCYL-TRNA SYNTHETASE |
| Bpl_scaf_10100-1.15 | POLY [ADP-RIBOSE] POLYMERASE |
| Bpl_scaf_10100-1.19 | POLY [ADP-RIBOSE] POLYMERASE |
| Bpl_scaf_10100-1.21 | POLY [ADP-RIBOSE] POLYMERASE |
| Bpl_scaf_10100-1.38 | |
| Bpl_scaf_10115-0.22 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_10115-1.17 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| Bpl_scaf_10115-1.18 | SERINE/THREONINE-PROTEIN KINASE |
| Bpl_scaf_10115-1.19 | UNCHARACTERIZED |
| Bpl_scaf_10116-0.0 | LORICRIN |
| Bpl_scaf_10133-0.3 | |
| Bpl_scaf_10133-0.4 | |
| Bpl_scaf_10133-1.10 | |
| Bpl_scaf_10133-1.11 | PARTITIONING DEFECTIVE 3 RELATED |
| Bpl_scaf_10133-1.7 | CEREBELLIN-RELATED |
| Bpl_scaf_10139-1.2 | |
| Bpl_scaf_10139-10.11 | |
| Bpl_scaf_10139-10.12 | |
| Bpl_scaf_10139-10.15 | SERINE/ARGININE-RICH SPLICING FACTOR |
| Bpl_scaf_10139-10.6 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_10139-10.7 | |
| Bpl_scaf_10139-10.8 | FORKHEAD BOX PROTEIN |
| Bpl_scaf_10139-11.6 | |
| Bpl_scaf_10139-11.8 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Bpl_scaf_10139-12.7 | GUANYLYL CYCLASE |
| Bpl_scaf_10139-13.5 | SYNAPTONEMAL COMPLEX PROTEIN-RELATED |
