Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s005.g0473.t1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP7/14 |
| Lsat_s005.g0474.t1 | SESQUIPEDALIAN |
| Lsat_s005.g0475.t1 | - |
| Lsat_s005.g0476.t1 | ARMADILLO SEGMENT POLARITY PROTEIN |
| Lsat_s005.g0477.t1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 10 |
| Lsat_s005.g0478.t1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| Lsat_s005.g0479.t1 | BLR2807 PROTEIN |
| Lsat_s005.g0480.t1 | GLOBIN-LIKE PROTEIN |
| Lsat_s005.g0481.t1 | BLR2807 PROTEIN |
| Lsat_s005.g0482.t1 | TTC17 PROTEIN |
| Lsat_s005.g0483.t1 | HCG1796489 |
| Lsat_s005.g0484.t1 | |
| Lsat_s005.g0485.t1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
| Lsat_s005.g0486.t1 | ATP SYNTHASE F CHAIN, MITOCHONDRIAL-RELATED |
| Lsat_s005.g0487.t1 | |
| Lsat_s005.g0488.t1 | SUGAR HYDROLASE-RELATED |
| Lsat_s005.g0489.t1 | NUCLEAR FACTOR-RELATED |
| Lsat_s005.g0490.t1 | HIKESHI FAMILY MEMBER |
| Lsat_s005.g0491.t1 | PROTEIN CBG26694 |
| Lsat_s005.g0492.t1 | PROTEIN CBG26694 |
| Lsat_s005.g0493.t1 | |
| Lsat_s005.g0494.t1 | YIPPEE DOMAIN-CONTAINING PROTEIN |
| Lsat_s005.g0495.t1 | EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN |
| Lsat_s005.g0496.t1 | EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN |
| Lsat_s005.g0497.t1 | FIMBRIN/PLASTIN |
| Lsat_s005.g0498.t1 | |
| Lsat_s005.g0499.t1 | |
| Lsat_s005.g0500.t1 | OPIOID GROWTH FACTOR RECEPTOR OGFR ZETA-TYPE OPIOID RECEPTOR |
| Lsat_s005.g0501.t1 | NUCLEAR PORE GLYCOPROTEIN P62-RELATED |
| Lsat_s005.g0502.t1 | ADAPTIN, ALPHA/GAMMA/EPSILON |
| Lsat_s005.g0503.t1 | AKT1 SUBSTRATE 1 PROTEIN |
| Lsat_s005.g0504.t1 | NUCLEAR HORMONE RECEPTOR |
| Lsat_s005.g0505.t1 | OPSIN |
| Lsat_s005.g0506.t1 | CELL DIVISION PROTEIN KINASE |
| Lsat_s005.g0507.t1 | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE |
| Lsat_s005.g0508.t1 | |
| Lsat_s005.g0509.t1 | |
| Lsat_s005.g0510.t1 | PROTEASE M1 ZINC METALLOPROTEASE |
| Lsat_s005.g0511.t1 | NEURABIN |
| Lsat_s005.g0512.t1 | |
| Lsat_s005.g0513.t1 | UNCHARACTERIZED |
| Lsat_s005.g0514.t1 | UNCHARACTERIZED |
| Lsat_s005.g0515.t1 | NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF |
| Lsat_s005.g0516.t1 | RESISTANCE TO INHIBITORS OF CHOLINESTERASE PROTEIN 3 RIC3 |
| Lsat_s005.g0517.t1 | UNCHARACTERIZED |
| Lsat_s005.g0518.t1 | TRANSCRIPTIONAL REPRESSOR PROTEIN YY |
| Lsat_s005.g0519.t1 | |
| Lsat_s005.g0520.t1 | |
| Lsat_s005.g0521.t1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Lsat_s005.g0522.t1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
