Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s006.g0001.t1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Lsat_s006.g0002.t1 | |
| Lsat_s006.g0003.t1 | |
| Lsat_s006.g0004.t1 | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR |
| Lsat_s006.g0005.t1 | TRANSMEMBRANE PROTEIN |
| Lsat_s006.g0006.t1 | |
| Lsat_s006.g0007.t1 | BONUS, ISOFORM C-RELATED |
| Lsat_s006.g0008.t1 | BONUS, ISOFORM C-RELATED |
| Lsat_s006.g0009.t1 | |
| Lsat_s006.g0010.t1 | |
| Lsat_s006.g0011.t1 | |
| Lsat_s006.g0012.t1 | |
| Lsat_s006.g0013.t1 | ZINC FINGER PROTEIN |
| Lsat_s006.g0014.t1 | KRAB DOMAIN C2H2 ZINC FINGER |
| Lsat_s006.g0015.t1 | |
| Lsat_s006.g0016.t1 | POLYCYSTIN FAMILY MEMBER |
| Lsat_s006.g0017.t1 | |
| Lsat_s006.g0018.t1 | ARSENITE METHYLTRANSFERASE |
| Lsat_s006.g0019.t1 | |
| Lsat_s006.g0020.t1 | ARSENITE METHYLTRANSFERASE |
| Lsat_s006.g0021.t1 | ARSENITE METHYLTRANSFERASE |
| Lsat_s006.g0022.t1 | POLYCOMB GROUP RING FINGER PROTEIN |
| Lsat_s006.g0023.t1 | C20ORF30 PROTEIN |
| Lsat_s006.g0024.t1 | SEC15 |
| Lsat_s006.g0025.t1 | SIDEROFLEXIN |
| Lsat_s006.g0026.t1 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED |
| Lsat_s006.g0027.t1 | SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION |
| Lsat_s006.g0028.t1 | |
| Lsat_s006.g0029.t1 | N6-ADENOSINE-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT |
| Lsat_s006.g0030.t1 | METALLOPROTEASE |
| Lsat_s006.g0031.t1 | BRCA1-ASSOCIATED ATM ACTIVATOR 1 |
| Lsat_s006.g0032.t1 | WD-40 REPEAT PROTEIN |
| Lsat_s006.g0033.t1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| Lsat_s006.g0034.t1 | UPF0193 PROTEIN EVG1 |
| Lsat_s006.g0035.t1 | ACYL-COENZYME A SYNTHETASE |
| Lsat_s006.g0036.t1 | |
| Lsat_s006.g0037.t1 | ACYL-COENZYME A SYNTHETASE |
| Lsat_s006.g0038.t1 | ACYL-COENZYME A SYNTHETASE |
| Lsat_s006.g0039.t1 | UNKEMPT FAMILY MEMBER |
| Lsat_s006.g0040.t1 | |
| Lsat_s006.g0041.t1 | PROTEIN CCSMST1 |
| Lsat_s006.g0042.t1 | PROKARYOTIC DNA TOPOISOMERASE |
| Lsat_s006.g0043.t1 | |
| Lsat_s006.g0044.t1 | PROTEIN FAM227B |
| Lsat_s006.g0045.t1 | SERINE HYDROXYMETHYLTRANSFERASE |
| Lsat_s006.g0046.t1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
| Lsat_s006.g0047.t1 | WD40 REPEAT DOMAIN 95 |
| Lsat_s006.g0048.t1 | INORGANIC PYROPHOSPHATASE |
| Lsat_s006.g0049.t1 | TRANSCRIPTION FACTOR 7 FAMILY MEMBER |
| Lsat_s006.g0050.t1 |
