Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s006.g0051.t1 | VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED |
| Lsat_s006.g0052.t1 | 60S RIBOSOMAL PROTEIN L34 |
| Lsat_s006.g0053.t1 | DIHYDRODIPICOLINATE SYNTHASE |
| Lsat_s006.g0054.t1 | |
| Lsat_s006.g0055.t1 | TEKTIN |
| Lsat_s006.g0056.t1 | NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED |
| Lsat_s006.g0057.t1 | SIMILAR TO PREFERENTIALLY EXPRESSED ANTIGEN IN MELANOMA-LIKE 3 |
| Lsat_s006.g0058.t1 | OXIDOREDUCTASE-LIKE DOMAIN-CONTAINING PROTEIN 1 |
| Lsat_s006.g0059.t1 | UNCHARACTERIZED |
| Lsat_s006.g0060.t1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Lsat_s006.g0061.t1 | DEOXYNUCLEOSIDE KINASE |
| Lsat_s006.g0062.t1 | RIBOSOMAL PROTEIN S7 |
| Lsat_s006.g0063.t1 | ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED |
| Lsat_s006.g0064.t1 | RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN |
| Lsat_s006.g0065.t1 | BETA TRANSDUCIN-RELATED PROTEIN |
| Lsat_s006.g0066.t1 | RIBONUCLEOPROTEIN RB97D |
| Lsat_s006.g0067.t1 | HEREGULIN-NEUREGULIN FAMILY MEMBER |
| Lsat_s006.g0068.t1 | |
| Lsat_s006.g0069.t1 | P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN |
| Lsat_s006.g0070.t1 | |
| Lsat_s006.g0071.t1 | CARNITINE O-ACYLTRANSFERASE |
| Lsat_s006.g0072.t1 | - |
| Lsat_s006.g0073.t1 | |
| Lsat_s006.g0074.t1 | |
| Lsat_s006.g0075.t1 | |
| Lsat_s006.g0076.t1 | LP04239P |
| Lsat_s006.g0077.t1 | |
| Lsat_s006.g0078.t1 | |
| Lsat_s006.g0079.t1 | |
| Lsat_s006.g0080.t1 | CADHERIN-23 |
| Lsat_s006.g0081.t1 | |
| Lsat_s006.g0082.t1 | |
| Lsat_s006.g0083.t1 | METHIONINE AMINOPEPTIDASE |
| Lsat_s006.g0084.t1 | ALCOHOL DEHYDROGENASE |
| Lsat_s006.g0085.t1 | ACTIVATING TRANSCRIPTION FACTOR ATF 4/5 |
| Lsat_s006.g0086.t1 | UNCHARACTERIZED |
| Lsat_s006.g0087.t1 | NUCLEAR MOVEMENT PROTEIN NUDC |
| Lsat_s006.g0088.t1 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD |
| Lsat_s006.g0089.t1 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD |
| Lsat_s006.g0090.t1 | HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN |
| Lsat_s006.g0091.t1 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD |
| Lsat_s006.g0092.t1 | |
| Lsat_s006.g0093.t1 | |
| Lsat_s006.g0094.t1 | 5'(3')-DEOXYRIBONUCLEOTIDASE |
| Lsat_s006.g0095.t1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 |
| Lsat_s006.g0096.t1 | ACTIN |
| Lsat_s006.g0097.t1 | ACTIN |
| Lsat_s006.g0098.t1 | ACTIN |
| Lsat_s006.g0099.t1 | |
| Lsat_s006.g0100.t1 | SI:CH211-171H4.7-RELATED |
