The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides39577 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39578 | |
| Paelopatides39579 | |
| Paelopatides39580 | |
| Paelopatides39581 | PROTEIN SIDEKICK |
| Paelopatides39582 | GEO11136P1-RELATED |
| Paelopatides39583 | NEUROLIGIN |
| Paelopatides39584 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides39585 | P53-INDUCED PROTEIN RELATED |
| Paelopatides39586 | REVERSE TRANSCRIPTASES |
| Paelopatides39587 | |
| Paelopatides39588 | |
| Paelopatides39589 | ACYL-MALONYL CONDENSING ENZYME-RELATED |
| Paelopatides39590 | PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING |
| Paelopatides39591 | PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING |
| Paelopatides39592 | INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 1-BINDING PROTEIN 1 |
| Paelopatides39593 | UNCHARACTERIZED |
| Paelopatides39594 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39595 | |
| Paelopatides39596 | |
| Paelopatides39597 | |
| Paelopatides39598 | NISCHARIN RELATED |
| Paelopatides39599 | SHIPPO-1-RELATED |
| Paelopatides39600 | CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 |
| Paelopatides39601 | RETROTRANSPOSON |
| Paelopatides39603 | |
| Paelopatides39604 | SORTING NEXIN 17 AND 27 |
| Paelopatides39605 | |
| Paelopatides39606 | ANTIGEN 332, DBL-LIKE PROTEIN-RELATED |
| Paelopatides39607 | ANTIGEN 332, DBL-LIKE PROTEIN-RELATED |
| Paelopatides39608 | SORTING NEXIN 17 AND 27 |
| Paelopatides39609 | |
| Paelopatides39610 | |
| Paelopatides39611 | GAMMA TUBULIN COMPLEX PROTEIN |
| Paelopatides39612 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED |
| Paelopatides39613 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39614 | PHOSPHOMEVALONATE KINASE |
| Paelopatides39615 | |
| Paelopatides39616 | |
| Paelopatides39617 | FCH AND DOUBLE SH3 DOMAINS PROTEIN |
| Paelopatides39618 | PROTEIN CBG26694 |
| Paelopatides39619 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39620 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39621 | RAS-RELATED PROTEIN RAB |
| Paelopatides39622 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides39623 | OSMOTIC AVOIDANCE ABNORMAL PROTEIN 1/WD REPEAT MEMBRANE PROTEIN |
| Paelopatides39624 | OSMOTIC AVOIDANCE ABNORMAL PROTEIN 1/WD REPEAT MEMBRANE PROTEIN |
| Paelopatides39625 | RETROTRANSPOSON |
| Paelopatides39626 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides39627 | TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 |
