The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides39680 | |
| Paelopatides39681 | SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE |
| Paelopatides39682 | |
| Paelopatides39683 | |
| Paelopatides39684 | |
| Paelopatides39685 | |
| Paelopatides39686 | SCY1-RELATED S/T PROTEIN KINASE-LIKE |
| Paelopatides39687 | |
| Paelopatides39688 | EPM2A-INTERACTING PROTEIN 1 |
| Paelopatides39689 | RADIAL SPOKEHEAD-RELATED |
| Paelopatides39690 | RADIAL SPOKEHEAD-RELATED |
| Paelopatides39691 | ATP-DEPENDENT RNA HELICASE DBP3 |
| Paelopatides39692 | ATP-DEPENDENT RNA HELICASE DBP3 |
| Paelopatides39693 | X-BOX BINDING PROTEIN 1 |
| Paelopatides39694 | |
| Paelopatides39695 | CADHERIN-87A |
| Paelopatides39696 | CADHERIN-23 |
| Paelopatides39697 | CADHERIN-23 |
| Paelopatides39698 | ACYL-COA SYNTHETASE |
| Paelopatides39699 | ACYL-COA SYNTHETASE |
| Paelopatides39700 | |
| Paelopatides39701 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 |
| Paelopatides39702 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides39705 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides39706 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides39707 | BONUS, ISOFORM C-RELATED |
| Paelopatides39708 | BONUS, ISOFORM C-RELATED |
| Paelopatides39709 | BONUS, ISOFORM C-RELATED |
| Paelopatides39710 | BNAA05G37250D PROTEIN |
| Paelopatides39711 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| Paelopatides39712 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| Paelopatides39713 | TRANSCRIPTIONAL REPRESSOR P66-RELATED |
| Paelopatides39714 | UNCHARACTERIZED |
| Paelopatides39715 | |
| Paelopatides39716 | MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBER |
| Paelopatides39717 | ACID CLUSTER PROTEIN 33 |
| Paelopatides39718 | ACID CLUSTER PROTEIN 33 |
| Paelopatides39719 | ARYLSULFATASE |
| Paelopatides39720 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Paelopatides39721 | |
| Paelopatides39722 | GAG-RELATED PROTEIN |
| Paelopatides39723 | |
| Paelopatides39724 | RIBITOL-5-PHOSPHATE XYLOSYLTRANSFERASE 1 |
| Paelopatides39725 | ATP SYNTHASE GAMMA CHAIN |
| Paelopatides39726 | CALCINEURIN B |
| Paelopatides39727 | - |
| Paelopatides39729 | CALCIUM-TRANSPORTING ATPASE |
| Paelopatides39730 | |
| Paelopatides39731 | PROTEIN CBG26694 |
| Paelopatides39732 | MACROGLOBULIN / COMPLEMENT |
