About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_039182-T1
OS493_039183-T1OSMOTIC AVOIDANCE ABNORMAL PROTEIN 1/WD REPEAT MEMBRANE PROTEIN
OS493_039184-T1
OS493_039185-T1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
OS493_039186-T1
OS493_039187-T1
OS493_039188-T1MULTICOPPER OXIDASE-RELATED
OS493_039189-T1
OS493_039190-T1P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE
OS493_039191-T1
OS493_039192-T1P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE
OS493_039193-T1GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
OS493_039194-T1
OS493_039195-T1TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172
OS493_039196-T1TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172
OS493_039197-T1TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172
OS493_039198-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
OS493_039199-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
OS493_039200-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
OS493_039201-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
OS493_039202-T1
OS493_039203-T1
OS493_039204-T1
OS493_039205-T1WD40 REPEAT PF20
OS493_039206-T1
OS493_039207-T1BETA TRANSDUCIN-RELATED PROTEIN
OS493_039208-T1BETA TRANSDUCIN-RELATED PROTEIN
OS493_039209-T1BETA TRANSDUCIN-RELATED PROTEIN
OS493_039210-T1
OS493_039211-T1
OS493_039212-T1
OS493_039213-T1
OS493_039215-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_039216-T1
OS493_039217-T1
OS493_039218-T1
OS493_039219-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
OS493_039220-T1
OS493_039221-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
OS493_039222-T1
OS493_039223-T1SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
OS493_039225-T1
OS493_039226-T1THYMIDINE PHOSPHORYLASE
OS493_039227-T1THYMIDINE PHOSPHORYLASE
OS493_039228-T1
OS493_039230-T1
OS493_039231-T1
OS493_039232-T1DNA LIGASE 1/3 FAMILY MEMBER
OS493_039233-T1PROTEIN PHOSPHATASE 2C
OS493_039234-T1
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