About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_015515-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_015516-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_015517-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_015518-T1SUGAR NUCLEOTIDE EPIMERASE RELATED
OS493_015519-T1RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN
OS493_015521-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_015522-T1INTELECTIN
OS493_015523-T1-
OS493_015524-T1PROGRAMMED CELL DEATH PROTEIN 5
OS493_015525-T1-
OS493_015526-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_015527-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_015528-T1CENTROSOMAL PROTEIN OF 89 KDA
OS493_015529-T1SER/THR PROTEIN KINASE ULK4
OS493_015530-T1RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN NNX3
OS493_015531-T1WD REPEAT CONTAINING PROTEIN 3 WDR3
OS493_015532-T1LEUCOKININ RECEPTOR-RELATED
OS493_015533-T1UNCHARACTERIZED
OS493_015534-T128S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL
OS493_015535-T1COPINE
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