About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_038960-T1ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1
OS493_038962-T1
OS493_038963-T1TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE
OS493_038964-T1
OS493_038965-T1
OS493_038966-T1LD33804P
OS493_038967-T1PEROXISOMAL MEMBRANE PROTEIN PEX13
OS493_038968-T1
OS493_038970-T1
OS493_038971-T1
OS493_038972-T1
OS493_038973-T1UNCHARACTERIZED
OS493_038974-T1GLUTATHIONE REDUCTASE
OS493_038975-T1
OS493_038976-T1ANKYRIN REPEAT CONTAINING
OS493_038977-T1MOLTING PROTEIN MLT-4
OS493_038978-T1COMM DOMAIN-CONTAINING PROTEIN 3
OS493_038979-T1
OS493_038980-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_038981-T1
OS493_038982-T1LEUCINE RICH REPEAT PROTEIN
OS493_038983-T1MALARIA ANTIGEN-RELATED
OS493_038984-T1
OS493_038985-T1MALARIA ANTIGEN-RELATED
OS493_038986-T1
OS493_038987-T1CONTACTIN 5
OS493_038988-T1
OS493_038989-T1POLYCOMB GROUP PROTEIN
OS493_038990-T1
OS493_038991-T1
OS493_038992-T1
OS493_038993-T1
OS493_038994-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_038995-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_038996-T1
OS493_038997-T1MACROGLOBULIN / COMPLEMENT
OS493_038998-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_038999-T1MULTICOPPER OXIDASE-RELATED
OS493_039001-T1MINA53 MYC INDUCED NUCLEAR ANTIGEN
OS493_039002-T1
OS493_039003-T1
OS493_039004-T1ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
OS493_039005-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_039006-T1NETRIN/LAMININ-RELATED
OS493_039007-T1
OS493_039008-T1
OS493_039009-T1TWO PORE CALCIUM CHANNEL PROTEIN 2
OS493_039010-T1
OS493_039011-T1RAN GTPASE-ACTIVATING PROTEIN 1
OS493_039012-T1
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