About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_015468-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_015469-T1-
OS493_015470-T1METHYLTRANSFERASE
OS493_015471-T1METHYLTRANSFERASE
OS493_015472-T1METHYLTRANSFERASE
OS493_015473-T1CYSTEINE PROTEASE ATG4
OS493_015474-T1CYSTEINE PROTEASE ATG4
OS493_015475-T1ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN
OS493_015476-T1ATP-DEPENDENT RNA HELICASE DBP3
OS493_015477-T1IRON-SULFUR CLUSTER ASSEMBLY PROTEIN
OS493_015478-T1GLUTATHIONE PEROXIDASE
OS493_015479-T1ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6
OS493_015480-T1DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1
OS493_015481-T1DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1
OS493_015482-T1HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
OS493_015485-T1-
OS493_015486-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_015487-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
OS493_015488-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
OS493_015489-T1-
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