About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_039235-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_039236-T1CRUMBS FAMILY MEMBER
OS493_039238-T1
OS493_039239-T1
OS493_039240-T1
OS493_039241-T1
OS493_039242-T1
OS493_039243-T1PHOSPHATIDYLINOSITOL KINASE
OS493_039244-T1HISTONE DEACETYLASE HDAC1-RELATED
OS493_039245-T1
OS493_039246-T1
OS493_039247-T1
OS493_039248-T1
OS493_039249-T1HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
OS493_039250-T1HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
OS493_039251-T1SIMILAR TO HYPOTHETICAL PROTEIN FLJ40298
OS493_039252-T1
OS493_039253-T1
OS493_039254-T1NADH-UBIQUINONE OXIDOREDUCTASE ASHI SUBUNIT
OS493_039255-T1SACSIN
OS493_039256-T1
OS493_039257-T1
OS493_039258-T1
OS493_039259-T1EXPRESSED PROTEIN
OS493_039260-T1
OS493_039261-T1
OS493_039262-T1XK-RELATED PROTEIN
OS493_039263-T1U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN
OS493_039264-T1SEC14 RELATED PROTEIN
OS493_039265-T1
OS493_039267-T1
OS493_039268-T1
OS493_039269-T1
OS493_039271-T1
OS493_039272-T1ALKALINE PHOSPHATASE
OS493_039273-T1
OS493_039274-T1G-PROTEIN COUPLED RECEPTOR
OS493_039276-T1PROTEASOME SUBUNIT ALPHA/BETA
OS493_039277-T1MUTATED IN BLADDER CANCER 1
OS493_039278-T1MUTATED IN BLADDER CANCER 1
OS493_039279-T1
OS493_039280-T1MUTATED IN BLADDER CANCER 1
OS493_039281-T1
OS493_039282-T1
OS493_039283-T1
OS493_039284-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 138
OS493_039285-T1
OS493_039287-T1
OS493_039288-T1MAINTENANCE OF KILLER 16 MAK16 PROTEIN-RELATED
OS493_039289-T1
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