About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_039290-T1
OS493_039291-T1
OS493_039292-T1SNF2/RAD54 FAMILY MEMBER
OS493_039293-T1
OS493_039294-T1SH2B ADAPTER PROTEIN
OS493_039295-T1SYNAPTOSOMAL ASSOCIATED PROTEIN
OS493_039296-T1GAMETOGENETIN-BINDING PROTEIN 2
OS493_039297-T1
OS493_039298-T1UNCHARACTERIZED
OS493_039299-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_039300-T1
OS493_039301-T1LEUCINE RICH REPEAT IN FLII INTERACTING PROTEIN
OS493_039302-T1LEUCINE RICH REPEAT IN FLII INTERACTING PROTEIN
OS493_039303-T1-
OS493_039304-T1
OS493_039307-T1
OS493_039308-T1
OS493_039309-T1GLYCOSYLTRANSFERASE-RELATED
OS493_039311-T1AGAP011099-PA
OS493_039312-T1WD REPEAT DOMAIN 9
OS493_039313-T1WD REPEAT DOMAIN 9
OS493_039314-T1ALDO/KETO REDUCTASE
OS493_039315-T1
OS493_039316-T1
OS493_039317-T1
OS493_039318-T1PERFORIN-LIKE PROTEIN 1
OS493_039319-T1PERFORIN-LIKE PROTEIN 1
OS493_039320-T1
OS493_039321-T1
OS493_039322-T1
OS493_039323-T1
OS493_039324-T1
OS493_039325-T1N-ACETYLTRANSFERASE 10
OS493_039326-T140S RIBOSOMAL PROTEIN S3A
OS493_039327-T1
OS493_039328-T1SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
OS493_039329-T1
OS493_039330-T1
OS493_039331-T1
OS493_039332-T1VILLIN
OS493_039333-T1
OS493_039334-T1
OS493_039335-T1
OS493_039336-T1
OS493_039337-T1
OS493_039338-T1
OS493_039339-T1CENTROSOMAL PROTEIN 2
OS493_039340-T1
OS493_039341-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_039342-T1
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