Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_034716-T1 | |
LLU|FUN_034717-T1 | MEMBRANE PROTEIN CH1 RELATED |
LLU|FUN_034718-T1 | SI:CH211-262H13.3-RELATED-RELATED |
LLU|FUN_034719-T1 | |
LLU|FUN_034720-T1 | |
LLU|FUN_034721-T1 | |
LLU|FUN_034722-T1 | |
LLU|FUN_034723-T1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
LLU|FUN_034724-T1 | |
LLU|FUN_034725-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
LLU|FUN_034726-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
LLU|FUN_034727-T1 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER |
LLU|FUN_034728-T1 | WD REPEAT DOMAIN 9 |
LLU|FUN_034729-T1 | AP ENDONUCLEASE |
LLU|FUN_034730-T1 | DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG |
LLU|FUN_034731-T1 | COILED COIL DOMAIN-CONTAINING PROTEIN 8, CCDC8 |
LLU|FUN_034733-T1 | |
LLU|FUN_034734-T1 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
LLU|FUN_034735-T1 | XAP-5 PROTEIN-RELATED |
LLU|FUN_034736-T1 | PHOSPHOFURIN ACIDIC CLUSTER SORTING PROTEIN |
LLU|FUN_034737-T1 | |
LLU|FUN_034738-T1 | YIP1 INTERACTING FACTOR HOMOLOG YIF1 PROTEIN |
LLU|FUN_034739-T1 | |
LLU|FUN_034740-T1 | |
LLU|FUN_034741-T1 | |
LLU|FUN_034742-T1 | |
LLU|FUN_034743-T1 | |
LLU|FUN_034744-T1 | |
LLU|FUN_034745-T1 | GLYCOGEN SYNTHASE |
LLU|FUN_034746-T1 | LIPASE MATURATION FACTOR |
LLU|FUN_034747-T1 | CONDENSIN-2 COMPLEX SUBUNIT H2 |
LLU|FUN_034748-T1 | DED DOMAIN-CONTAINING PROTEIN |
LLU|FUN_034749-T1 | DED DOMAIN-CONTAINING PROTEIN |
LLU|FUN_034750-T1 | |
LLU|FUN_034751-T1 | |
LLU|FUN_034752-T1 | DED DOMAIN-CONTAINING PROTEIN |
LLU|FUN_034753-T1 | |
LLU|FUN_034755-T1 | DED DOMAIN-CONTAINING PROTEIN |
LLU|FUN_034756-T1 | |
LLU|FUN_034757-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_034758-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_034759-T1 | |
LLU|FUN_034760-T1 | |
LLU|FUN_034761-T1 | |
LLU|FUN_034762-T1 | |
LLU|FUN_034763-T1 | |
LLU|FUN_034764-T1 | |
LLU|FUN_034765-T1 | |
LLU|FUN_034766-T1 | SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING |
LLU|FUN_034767-T1 | SOLUTE CARRIER FAMILY 35 |