Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_034666-T1 | |
LLU|FUN_034667-T1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
LLU|FUN_034668-T1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
LLU|FUN_034669-T1 | |
LLU|FUN_034670-T1 | KICSTOR COMPLEX PROTEIN C12ORF66 |
LLU|FUN_034671-T1 | KICSTOR COMPLEX PROTEIN C12ORF66 |
LLU|FUN_034672-T1 | |
LLU|FUN_034673-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
LLU|FUN_034674-T1 | |
LLU|FUN_034675-T1 | HYR DOMAIN-CONTAINING PROTEIN |
LLU|FUN_034676-T1 | |
LLU|FUN_034677-T1 | |
LLU|FUN_034678-T1 | HYR DOMAIN-CONTAINING PROTEIN |
LLU|FUN_034679-T1 | |
LLU|FUN_034680-T1 | |
LLU|FUN_034681-T1 | |
LLU|FUN_034682-T1 | |
LLU|FUN_034683-T1 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
LLU|FUN_034684-T1 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
LLU|FUN_034685-T1 | |
LLU|FUN_034686-T1 | AGAP008648-PA |
LLU|FUN_034687-T1 | |
LLU|FUN_034688-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_034689-T1 | |
LLU|FUN_034690-T1 | |
LLU|FUN_034691-T1 | MEDIATOR COMPLEX SUBUNIT |
LLU|FUN_034692-T1 | |
LLU|FUN_034693-T1 | |
LLU|FUN_034694-T1 | PROTEIN CBG24663 |
LLU|FUN_034695-T1 | PEROXYUREIDOACRYLATE/UREIDOACRYLATE AMIDOHYDROLASE-RELATED |
LLU|FUN_034696-T1 | FMRFAMIDE RECEPTOR-RELATED |
LLU|FUN_034697-T1 | |
LLU|FUN_034698-T1 | |
LLU|FUN_034699-T1 | |
LLU|FUN_034700-T1 | CS DOMAIN-CONTAINING PROTEIN |
LLU|FUN_034701-T1 | |
LLU|FUN_034702-T1 | |
LLU|FUN_034703-T1 | INTIMAL THICKNESS RECEPTOR-RELATED |
LLU|FUN_034704-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
LLU|FUN_034705-T1 | SLEI FAMILY PROTEIN |
LLU|FUN_034706-T1 | |
LLU|FUN_034707-T1 | |
LLU|FUN_034708-T1 | G-PROTEIN COUPLED RECEPTOR 89-RELATED |
LLU|FUN_034709-T1 | SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT |
LLU|FUN_034710-T1 | HISTONE H4 TRANSCRIPTION FACTOR-RELATED |
LLU|FUN_034711-T1 | UNCHARACTERIZED |
LLU|FUN_034712-T1 | UNCHARACTERIZED |
LLU|FUN_034713-T1 | LEUCOKININ RECEPTOR-RELATED |
LLU|FUN_034714-T1 | |
LLU|FUN_034715-T1 | LEUCOKININ RECEPTOR-RELATED |