About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_014658-T1UBIQUITIN-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1
OS493_014659-T1-
OS493_014660-T1FLAP ENDONUCLEASE FAMILY MEMBER
OS493_014661-T1ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
OS493_014662-T1ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
OS493_014663-T1ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
OS493_014664-T1ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
OS493_014666-T1ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
OS493_014667-T1PHOSPHOLIPASE A-2-ACTIVATING PROTEIN
OS493_014668-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_014669-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_014670-T1-
OS493_014671-T1AP1 GAMMA SUBUNIT BINDING PROTEIN 1
OS493_014672-T1AP1 GAMMA SUBUNIT BINDING PROTEIN 1
OS493_014673-T1CENTROMERE PROTEIN W
OS493_014674-T1ZINC FINGERS AND HOMEOBOXES PROTEIN 1, ISOFORM 2
OS493_014675-T1METALLOPROTEASE
OS493_014676-T1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
OS493_014677-T1RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
OS493_014678-T1RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
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