Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_036819-T1 | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED |
OS493_036820-T1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 |
OS493_036821-T1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 |
OS493_036822-T1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 |
OS493_036823-T1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 |
OS493_036824-T1 | |
OS493_036825-T1 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
OS493_036826-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_036827-T1 | NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A |
OS493_036828-T1 | CALCIUM-SENSING RECEPTOR-RELATED |
OS493_036829-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_036830-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_036831-T1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 |
OS493_036832-T1 | |
OS493_036833-T1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 |
OS493_036834-T1 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
OS493_036835-T1 | |
OS493_036836-T1 | |
OS493_036838-T1 | |
OS493_036840-T1 | |
OS493_036842-T1 | E3 UBIQUITIN-PROTEIN LIGASE UBR4 |
OS493_036843-T1 | E3 UBIQUITIN-PROTEIN LIGASE UBR4 |
OS493_036844-T1 | PENTRAXIN |
OS493_036845-T1 | PERFORIN-LIKE PROTEIN 1 |
OS493_036848-T1 | E3 UBIQUITIN-PROTEIN LIGASE UBR4 |
OS493_036849-T1 | E3 UBIQUITIN-PROTEIN LIGASE UBR4 |
OS493_036850-T1 | E3 UBIQUITIN-PROTEIN LIGASE UBR4 |
OS493_036851-T1 | |
OS493_036852-T1 | |
OS493_036853-T1 | |
OS493_036854-T1 | ASPARTYL AMINOPEPTIDASE |
OS493_036855-T1 | ASPARTYL AMINOPEPTIDASE |
OS493_036856-T1 | ASPARTYL AMINOPEPTIDASE |
OS493_036857-T1 | ASPARTYL AMINOPEPTIDASE |
OS493_036858-T1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
OS493_036859-T1 | OS05G0521000 PROTEIN |
OS493_036860-T1 | |
OS493_036861-T1 | |
OS493_036862-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_036863-T1 | COLLAGEN ALPHA |
OS493_036864-T1 | |
OS493_036866-T1 | |
OS493_036867-T1 | PENICILLIN-BINDING PROTEIN |
OS493_036868-T1 | PENICILLIN-BINDING PROTEIN |
OS493_036869-T1 | PENICILLIN-BINDING PROTEIN |
OS493_036870-T1 | |
OS493_036871-T1 | |
OS493_036872-T1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
OS493_036873-T1 | |
OS493_036874-T1 | NUCLEAR FACTOR ERYTHROID 2-RELATED FACTOR |