About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_036819-T1LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED
OS493_036820-T1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5
OS493_036821-T1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5
OS493_036822-T1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5
OS493_036823-T1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5
OS493_036824-T1
OS493_036825-T1GLYCOSYLTRANSFERASE 14 FAMILY MEMBER
OS493_036826-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_036827-T1NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A
OS493_036828-T1CALCIUM-SENSING RECEPTOR-RELATED
OS493_036829-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_036830-T1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
OS493_036831-T1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5
OS493_036832-T1
OS493_036833-T1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5
OS493_036834-T1GLYCOSYLTRANSFERASE 14 FAMILY MEMBER
OS493_036835-T1
OS493_036836-T1
OS493_036838-T1
OS493_036840-T1
OS493_036842-T1E3 UBIQUITIN-PROTEIN LIGASE UBR4
OS493_036843-T1E3 UBIQUITIN-PROTEIN LIGASE UBR4
OS493_036844-T1PENTRAXIN
OS493_036845-T1PERFORIN-LIKE PROTEIN 1
OS493_036848-T1E3 UBIQUITIN-PROTEIN LIGASE UBR4
OS493_036849-T1E3 UBIQUITIN-PROTEIN LIGASE UBR4
OS493_036850-T1E3 UBIQUITIN-PROTEIN LIGASE UBR4
OS493_036851-T1
OS493_036852-T1
OS493_036853-T1
OS493_036854-T1ASPARTYL AMINOPEPTIDASE
OS493_036855-T1ASPARTYL AMINOPEPTIDASE
OS493_036856-T1ASPARTYL AMINOPEPTIDASE
OS493_036857-T1ASPARTYL AMINOPEPTIDASE
OS493_036858-T1CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
OS493_036859-T1OS05G0521000 PROTEIN
OS493_036860-T1
OS493_036861-T1
OS493_036862-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_036863-T1COLLAGEN ALPHA
OS493_036864-T1
OS493_036866-T1
OS493_036867-T1PENICILLIN-BINDING PROTEIN
OS493_036868-T1PENICILLIN-BINDING PROTEIN
OS493_036869-T1PENICILLIN-BINDING PROTEIN
OS493_036870-T1
OS493_036871-T1
OS493_036872-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
OS493_036873-T1
OS493_036874-T1NUCLEAR FACTOR ERYTHROID 2-RELATED FACTOR
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