About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_036544-T1CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19
OS493_036545-T1CONTACTIN 5
OS493_036548-T1
OS493_036549-T1
OS493_036550-T1
OS493_036551-T1
OS493_036552-T1
OS493_036553-T1
OS493_036554-T1
OS493_036555-T1
OS493_036556-T1
OS493_036557-T1
OS493_036558-T1
OS493_036559-T1CRUMBS FAMILY MEMBER
OS493_036560-T1
OS493_036561-T1
OS493_036563-T1
OS493_036564-T1
OS493_036566-T1
OS493_036567-T1
OS493_036569-T1
OS493_036570-T1
OS493_036571-T1
OS493_036574-T1
OS493_036575-T1
OS493_036576-T1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
OS493_036577-T1
OS493_036578-T1EXPRESSED PROTEIN
OS493_036579-T1
OS493_036580-T1
OS493_036581-T1
OS493_036582-T1MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED
OS493_036583-T1PROTEIN PHOSPHATASE
OS493_036584-T1CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP
OS493_036585-T1
OS493_036586-T1CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN
OS493_036587-T1CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN
OS493_036588-T1CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN
OS493_036589-T1HISTONE H2A
OS493_036590-T1CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP
OS493_036591-T1CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP
OS493_036592-T1CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP
OS493_036593-T1CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP
OS493_036594-T1CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP
OS493_036595-T1
OS493_036596-T1
OS493_036597-T1
OS493_036598-T1
OS493_036599-T1
OS493_036600-T1
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