Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_036380-T1 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
OS493_036381-T1 | INTEGRIN ALPHA REPEAT DOMAIN-CONTAINING |
OS493_036382-T1 | |
OS493_036383-T1 | |
OS493_036384-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_036385-T1 | |
OS493_036386-T1 | |
OS493_036387-T1 | |
OS493_036388-T1 | METAXIN RELATED |
OS493_036389-T1 | METAXIN RELATED |
OS493_036390-T1 | METAXIN RELATED |
OS493_036391-T1 | CYTOCHROME P450 FAMILY 4 |
OS493_036392-T1 | FATTY ACID DESATURASE 2 |
OS493_036393-T1 | FRIZZLED |
OS493_036394-T1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
OS493_036395-T1 | KU AUTOANTIGEN DNA HELICASE |
OS493_036397-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
OS493_036398-T1 | ELECTRON TRANSPORT OXIDOREDUCTASE |
OS493_036401-T1 | CYCLIN |
OS493_036402-T1 | |
OS493_036403-T1 | |
OS493_036404-T1 | |
OS493_036405-T1 | ANKYRIN REPEAT CONTAINING |
OS493_036406-T1 | |
OS493_036407-T1 | |
OS493_036408-T1 | |
OS493_036409-T1 | SI:CH211-189E2.2 |
OS493_036410-T1 | METHYL-CPG BINDING PROTEIN, MBD |
OS493_036411-T1 | NADP-SPECIFIC ISOCITRATE DEHYDROGENASE |
OS493_036412-T1 | |
OS493_036414-T1 | |
OS493_036415-T1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
OS493_036416-T1 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB |
OS493_036417-T1 | |
OS493_036418-T1 | HEME OXYGENASE |
OS493_036419-T1 | GH3 DOMAIN-CONTAINING PROTEIN |
OS493_036420-T1 | GH3 DOMAIN-CONTAINING PROTEIN |
OS493_036421-T1 | GH3 DOMAIN-CONTAINING PROTEIN |
OS493_036422-T1 | GH3 DOMAIN-CONTAINING PROTEIN |
OS493_036423-T1 | LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED |
OS493_036424-T1 | |
OS493_036425-T1 | COLLAGEN ALPHA |
OS493_036426-T1 | ATP-DEPENDENT RNA HELICASE DBP3 |
OS493_036427-T1 | ADIPOCYTE-SPECIFIC PROTEIN 4-RELATED |
OS493_036428-T1 | ADP RIBOSYLATION FACTOR-RELATED |
OS493_036429-T1 | 4.1 G PROTEIN |
OS493_036430-T1 | ATP-BINDING CASSETTE SUB-FAMILY B |
OS493_036431-T1 | ATP-BINDING CASSETTE SUB-FAMILY B |
OS493_036432-T1 | |
OS493_036433-T1 | TGF-BETA FAMILY |