About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_036380-T1POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
OS493_036381-T1INTEGRIN ALPHA REPEAT DOMAIN-CONTAINING
OS493_036382-T1
OS493_036383-T1
OS493_036384-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_036385-T1
OS493_036386-T1
OS493_036387-T1
OS493_036388-T1METAXIN RELATED
OS493_036389-T1METAXIN RELATED
OS493_036390-T1METAXIN RELATED
OS493_036391-T1CYTOCHROME P450 FAMILY 4
OS493_036392-T1FATTY ACID DESATURASE 2
OS493_036393-T1FRIZZLED
OS493_036394-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_036395-T1KU AUTOANTIGEN DNA HELICASE
OS493_036397-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
OS493_036398-T1ELECTRON TRANSPORT OXIDOREDUCTASE
OS493_036401-T1CYCLIN
OS493_036402-T1
OS493_036403-T1
OS493_036404-T1
OS493_036405-T1ANKYRIN REPEAT CONTAINING
OS493_036406-T1
OS493_036407-T1
OS493_036408-T1
OS493_036409-T1SI:CH211-189E2.2
OS493_036410-T1METHYL-CPG BINDING PROTEIN, MBD
OS493_036411-T1NADP-SPECIFIC ISOCITRATE DEHYDROGENASE
OS493_036412-T1
OS493_036414-T1
OS493_036415-T1SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE
OS493_036416-T1MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB
OS493_036417-T1
OS493_036418-T1HEME OXYGENASE
OS493_036419-T1GH3 DOMAIN-CONTAINING PROTEIN
OS493_036420-T1GH3 DOMAIN-CONTAINING PROTEIN
OS493_036421-T1GH3 DOMAIN-CONTAINING PROTEIN
OS493_036422-T1GH3 DOMAIN-CONTAINING PROTEIN
OS493_036423-T1LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED
OS493_036424-T1
OS493_036425-T1COLLAGEN ALPHA
OS493_036426-T1ATP-DEPENDENT RNA HELICASE DBP3
OS493_036427-T1ADIPOCYTE-SPECIFIC PROTEIN 4-RELATED
OS493_036428-T1ADP RIBOSYLATION FACTOR-RELATED
OS493_036429-T14.1 G PROTEIN
OS493_036430-T1ATP-BINDING CASSETTE SUB-FAMILY B
OS493_036431-T1ATP-BINDING CASSETTE SUB-FAMILY B
OS493_036432-T1
OS493_036433-T1TGF-BETA FAMILY
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