About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_036329-T1
OS493_036330-T1DYNEIN HEAVY CHAIN
OS493_036331-T1DYNEIN HEAVY CHAIN
OS493_036332-T1UNCHARACTERIZED
OS493_036333-T1DYNEIN HEAVY CHAIN
OS493_036334-T1UNCHARACTERIZED
OS493_036335-T1
OS493_036336-T1SULFOTRANSFERASE SULT
OS493_036337-T1SULFOTRANSFERASE SULT
OS493_036338-T1SULFOTRANSFERASE SULT
OS493_036339-T1SULFOTRANSFERASE SULT
OS493_036340-T1ASPARTATE AMINOTRANSFERASE
OS493_036341-T1ASPARTATE AMINOTRANSFERASE
OS493_036342-T1ZINC FINGER PROTEIN
OS493_036343-T1UNCHARACTERIZED
OS493_036344-T1MISEXPRESSION SUPPRESSOR OF RAS 6
OS493_036345-T1BEIGE/BEACH-RELATED
OS493_036346-T1UNCHARACTERIZED
OS493_036347-T1ATP-DEPENDENT PROTEASE
OS493_036348-T1ATP-DEPENDENT PROTEASE
OS493_036349-T1
OS493_036350-T1X-BOX BINDING PROTEIN 1
OS493_036351-T1UNCHARACTERIZED
OS493_036353-T1
OS493_036354-T1UNCHARACTERIZED
OS493_036355-T1UNCHARACTERIZED
OS493_036356-T1UNCHARACTERIZED
OS493_036357-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_036358-T1ATP-DEPENDENT PROTEASE
OS493_036359-T1ATP-DEPENDENT PROTEASE
OS493_036360-T1LONG-CHAIN-FATTY-ACID--COA LIGASE
OS493_036361-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_036362-T1
OS493_036363-T1
OS493_036364-T1
OS493_036365-T1
OS493_036366-T1LONG-CHAIN-FATTY-ACID--COA LIGASE
OS493_036367-T1UNCHARACTERIZED
OS493_036368-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_036369-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_036370-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_036371-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_036372-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_036373-T1DEPHOSPHO-COA KINASE-RELATED
OS493_036374-T1NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASE
OS493_036375-T1ADHESION REGULATING MOLECULE 1 110 KDA CELL MEMBRANE GLYCOPROTEIN
OS493_036376-T1UPSTREAM BINDING TRANSCRIPTION FACTOR
OS493_036377-T1
OS493_036378-T1PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
OS493_036379-T1INORGANIC PYROPHOSPHATASE
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