About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_036434-T1TGF-BETA FAMILY
OS493_036435-T1KH DOMAIN CONTAINING RNA BINDING PROTEIN
OS493_036436-T1ASPARAGINE SYNTHETASE
OS493_036437-T1UNCHARACTERIZED
OS493_036438-T1UNCHARACTERIZED
OS493_036439-T1UNCHARACTERIZED
OS493_036440-T1UNCHARACTERIZED
OS493_036441-T1UNCHARACTERIZED
OS493_036442-T1UNCHARACTERIZED
OS493_036443-T1KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED
OS493_036444-T1FI23527P1
OS493_036445-T1
OS493_036446-T1ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
OS493_036447-T1CMF/LEK/CENP CELL DIVISION-RELATED
OS493_036448-T1
OS493_036449-T1E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED
OS493_036450-T1UNCHARACTERIZED
OS493_036451-T1UNCHARACTERIZED
OS493_036452-T1WD REPEAT-CONTAINING PROTEIN POP1
OS493_036453-T1-
OS493_036454-T1
OS493_036455-T1PENTRAXIN
OS493_036456-T1PROTEIN MCM10 HOMOLOG
OS493_036457-T1PROTEIN MCM10 HOMOLOG
OS493_036458-T1
OS493_036459-T1PROTEIN MCM10 HOMOLOG
OS493_036460-T1SI:DKEY-57N24.6
OS493_036461-T1
OS493_036462-T1SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN
OS493_036463-T1SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN
OS493_036464-T1-
OS493_036465-T1
OS493_036466-T1UNCHARACTERIZED
OS493_036467-T1PROTEIN MCM10 HOMOLOG
OS493_036468-T1
OS493_036469-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_036471-T1EXPANSIN-LIKE PROTEIN 2
OS493_036472-T1
OS493_036473-T1
OS493_036474-T1
OS493_036476-T1ACYL-COA DESATURASE
OS493_036477-T1ACYL-COA DESATURASE
OS493_036478-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_036479-T1DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT
OS493_036480-T1A1 CISTRON SPLICING FACTOR AAR2-RELATED
OS493_036481-T1F-BOX ONLY PROTEIN 33
OS493_036482-T1
OS493_036483-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_036485-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_036486-T1ACYL-COA DESATURASE
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