Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_036653-T1 | BASIGIN RELATED |
OS493_036654-T1 | |
OS493_036659-T1 | |
OS493_036661-T1 | SER/THR-RICH PROTEIN T10 IN DGCR REGION |
OS493_036663-T1 | SER/THR-RICH PROTEIN T10 IN DGCR REGION |
OS493_036664-T1 | ACYL-COENZYME A THIOESTERASE-RELATED |
OS493_036665-T1 | |
OS493_036666-T1 | METHYLTHIOADENOSINE/PURINE NUCLEOSIDE PHOSPHORYLASE |
OS493_036667-T1 | |
OS493_036668-T1 | SOLUTE CARRIER FAMILY 35 |
OS493_036669-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_036670-T1 | POLYCYSTIN-1 |
OS493_036671-T1 | BETA TRANSDUCIN-RELATED PROTEIN |
OS493_036672-T1 | |
OS493_036673-T1 | |
OS493_036674-T1 | UNCHARACTERIZED |
OS493_036675-T1 | CHROMOSOME 20 ORF85 FAMILY MEMBER |
OS493_036676-T1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
OS493_036677-T1 | |
OS493_036678-T1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
OS493_036679-T1 | VIMENTIN-TYPE INTERMEDIATE FILAMENT-ASSOCIATED COILED-COIL PROTEIN |
OS493_036680-T1 | RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 |
OS493_036681-T1 | |
OS493_036683-T1 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19 |
OS493_036684-T1 | |
OS493_036685-T1 | |
OS493_036686-T1 | TETRASPANIN |
OS493_036688-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25 |
OS493_036689-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25 |
OS493_036690-T1 | |
OS493_036691-T1 | BETA-TUBULIN COFACTOR D |
OS493_036692-T1 | PROTEIN DIAPHANOUS |
OS493_036693-T1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
OS493_036694-T1 | |
OS493_036695-T1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
OS493_036696-T1 | |
OS493_036697-T1 | ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL |
OS493_036698-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_036699-T1 | ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL |
OS493_036700-T1 | |
OS493_036701-T1 | ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL |
OS493_036702-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_036703-T1 | DOM-3 RELATED |
OS493_036704-T1 | DOM-3 RELATED |
OS493_036705-T1 | DOM-3 RELATED |
OS493_036706-T1 | DOM-3 RELATED |
OS493_036707-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_036709-T1 | DOM-3 RELATED |
OS493_036710-T1 | DOM-3 RELATED |
OS493_036711-T1 | DOM-3 RELATED |