About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_036712-T1DOM-3 RELATED
OS493_036714-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_036715-T1DOM-3 RELATED
OS493_036716-T1
OS493_036717-T1
OS493_036718-T1
OS493_036719-T1
OS493_036720-T1
OS493_036721-T1
OS493_036722-T1
OS493_036723-T1NACHT DOMAIN-CONTAINING PROTEIN
OS493_036724-T1
OS493_036725-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_036726-T1METAL DEPENDENT HYDROLASE - RELATED
OS493_036727-T1
OS493_036728-T1IP22168P
OS493_036729-T1
OS493_036730-T1
OS493_036731-T1
OS493_036732-T1TRANSDUCIN BETA-LIKE PROTEIN 2
OS493_036733-T1ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED
OS493_036734-T1DNA POLYMERASE DELTA SUBUNIT 4
OS493_036735-T1INO80 COMPLEX SUBUNIT B
OS493_036736-T1PROTEASE M14 CARBOXYPEPTIDASE
OS493_036737-T1PROTEASE M14 CARBOXYPEPTIDASE
OS493_036738-T1
OS493_036739-T1
OS493_036740-T1PROTEIN EVA-1
OS493_036741-T1PROTEIN EVA-1
OS493_036744-T1
OS493_036745-T1
OS493_036746-T1CUB DOMAIN-CONTAINING PROTEIN
OS493_036747-T1BONE MARROW PROTEOGLYCAN
OS493_036748-T1
OS493_036749-T1
OS493_036750-T1
OS493_036751-T1CYCLIN-D-BINDING MYB-LIKE TRANSCRIPTION FACTOR 1
OS493_036752-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_036753-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_036754-T1
OS493_036755-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_036756-T1SPHINGOMYELIN PHOSPHODIESTERASE
OS493_036758-T1
OS493_036759-T1
OS493_036760-T1
OS493_036761-T1
OS493_036762-T1
OS493_036763-T1
OS493_036764-T1HOMEOBOX PROTEIN MOX
OS493_036765-T1
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