About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_036875-T1
OS493_036876-T1
OS493_036877-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
OS493_036878-T1
OS493_036879-T1PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
OS493_036880-T1PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
OS493_036881-T1
OS493_036882-T1PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
OS493_036884-T1
OS493_036885-T1PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
OS493_036886-T1ADENOSINE DEAMINASE
OS493_036887-T1PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17
OS493_036888-T1
OS493_036889-T1PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17
OS493_036890-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 60
OS493_036891-T1SD08549P
OS493_036892-T1SPERMATOGENESIS-ASSOCIATED 4-RELATED
OS493_036893-T1PR DOMAIN ZINC FINGER PROTEIN
OS493_036894-T1
OS493_036895-T1IONOTROPIC GLUTAMATE RECEPTOR
OS493_036896-T1
OS493_036898-T1DOUBLECORTIN DOMAIN CONTAINING 2
OS493_036899-T1
OS493_036900-T1
OS493_036901-T1RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED
OS493_036902-T1RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED
OS493_036903-T1EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE
OS493_036904-T1
OS493_036905-T1
OS493_036906-T1EXPRESSED PROTEIN
OS493_036907-T1
OS493_036908-T1RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER
OS493_036909-T1N-ACETYLTRANSFERASE ECO
OS493_036910-T1
OS493_036911-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_036912-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_036913-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_036914-T1PROTEIN CBG12054-RELATED
OS493_036915-T1PROTEIN CBG12054-RELATED
OS493_036916-T1
OS493_036917-T1
OS493_036918-T1L-ASPARAGINASE
OS493_036919-T1L-ASPARAGINASE
OS493_036920-T1JOUBERIN
OS493_036921-T1JOUBERIN
OS493_036922-T1
OS493_036923-T1
OS493_036924-T1
OS493_036925-T1
OS493_036926-T1
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