About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_036927-T1
OS493_036928-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1
OS493_036929-T1INNER MEMBRANE PROTEIN, PROBABLE PERMEASE
OS493_036930-T1UNCHARACTERIZED PROTEIN YFIH
OS493_036931-T1
OS493_036932-T1TUDOR DOMAIN CONTAINING PROTEIN
OS493_036933-T1TUDOR DOMAIN CONTAINING PROTEIN
OS493_036934-T1ACETYL-COA C-ACYLTRANSFERASE
OS493_036935-T1
OS493_036936-T1NEURENSIN 1-RELATED
OS493_036937-T1
OS493_036938-T1
OS493_036939-T1
OS493_036940-T1
OS493_036941-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
OS493_036943-T1DEP DOMAIN PROTEIN
OS493_036944-T12-HYDROXYACID DEHYDROGENASE-RELATED
OS493_036945-T12-HYDROXYACID DEHYDROGENASE-RELATED
OS493_036946-T12-HYDROXYACID DEHYDROGENASE-RELATED
OS493_036947-T1PROTEIN YIPPEE-LIKE CG15309-RELATED
OS493_036948-T1TWO PORE CALCIUM CHANNEL PROTEIN 1
OS493_036949-T1
OS493_036950-T1
OS493_036951-T1
OS493_036952-T1
OS493_036953-T1
OS493_036954-T1BOLA-LIKE PROTEIN-RELATED
OS493_036955-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
OS493_036956-T1POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
OS493_036957-T1
OS493_036958-T1PHOSPHATIDYLGLYCEROL PHOSPHOLIPASE C
OS493_036959-T1
OS493_036960-T1RAPSYN-RELATED
OS493_036961-T1RAPSYN-RELATED
OS493_036962-T1
OS493_036963-T1UNCHARACTERIZED
OS493_036964-T1UNCHARACTERIZED
OS493_036965-T1COILED-COIL DOMAIN-CONTAINING 74A
OS493_036966-T1TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED
OS493_036967-T1
OS493_036968-T1MULTICOPPER OXIDASE-RELATED
OS493_036969-T1LEUCINE-RICH REPEAT-CONTAINING
OS493_036970-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_036971-T1ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
OS493_036973-T1
OS493_036974-T1-
OS493_036975-T1UNCHARACTERIZED
OS493_036976-T1
OS493_036977-T1
OS493_036978-T1
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