Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_036766-T1 | CHROMOBOX PROTEIN |
OS493_036767-T1 | IQ CALMODULIN-BINDING MOTIF CONTAINING PROTEIN 1 |
OS493_036768-T1 | WD40 REPEAT PROTEIN 12, 37 |
OS493_036769-T1 | |
OS493_036770-T1 | ATAXIN-7-LIKE PROTEIN 3 |
OS493_036771-T1 | LEUCINE RICH REPEAT PROTEIN |
OS493_036772-T1 | DNA HELICASE RECQ FAMILY MEMBER |
OS493_036773-T1 | |
OS493_036774-T1 | |
OS493_036775-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_036776-T1 | |
OS493_036777-T1 | - |
OS493_036778-T1 | |
OS493_036781-T1 | |
OS493_036782-T1 | EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED |
OS493_036783-T1 | |
OS493_036784-T1 | |
OS493_036785-T1 | N6-ADENOSINE-METHYLTRANSFERASE |
OS493_036786-T1 | SYNEMBRYN |
OS493_036787-T1 | EPH RECEPTOR A5 |
OS493_036788-T1 | U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED |
OS493_036789-T1 | FLAP ENDONUCLEASE FAMILY MEMBER |
OS493_036790-T1 | |
OS493_036791-T1 | |
OS493_036792-T1 | |
OS493_036793-T1 | GLUCOSYLCERAMIDASE |
OS493_036794-T1 | ANOCTAMIN |
OS493_036795-T1 | |
OS493_036796-T1 | |
OS493_036797-T1 | |
OS493_036798-T1 | SODIUM/POTASSIUM/CALCIUM EXCHANGER |
OS493_036799-T1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
OS493_036800-T1 | |
OS493_036802-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_036803-T1 | |
OS493_036804-T1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
OS493_036805-T1 | |
OS493_036806-T1 | REGULATOR-RELATED |
OS493_036807-T1 | |
OS493_036808-T1 | SER/THR-PROTEIN KINASE RIO2 |
OS493_036809-T1 | |
OS493_036810-T1 | NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED |
OS493_036811-T1 | POS9-ACTIVATING FACTOR FAP7-RELATED |
OS493_036812-T1 | |
OS493_036813-T1 | MITOCHONDRIAL RIBOSOMAL PROTEIN L37 |
OS493_036814-T1 | |
OS493_036815-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_036816-T1 | COMPLEMENT COMPONENT C6 |
OS493_036817-T1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
OS493_036818-T1 |