Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_7423-0.18 | ZINC FINGER PROTEIN |
| Bpl_scaf_7423-1.10 | CYTOCHROME P450 26 |
| Bpl_scaf_7423-1.4 | ERYTHROID DIFFERENTIATION-RELATED FACTOR 1 |
| Bpl_scaf_7423-1.9 | |
| Bpl_scaf_7423-10.8 | |
| Bpl_scaf_7423-11.11 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_7423-11.14 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_7423-11.15 | |
| Bpl_scaf_7423-11.3 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_7423-11.47 | |
| Bpl_scaf_7423-13.14 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C |
| Bpl_scaf_7423-13.15 | OXA1 |
| Bpl_scaf_7423-13.22 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_7423-13.23 | PROTEIN PSIB-RELATED-RELATED |
| Bpl_scaf_7423-13.9 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
| Bpl_scaf_7423-14.10 | NUCLEAR PORE COMPLEX PROTEIN NUP160 |
| Bpl_scaf_7423-14.7 | TRANSCRIPTION FACTOR-LIKE 5 PROTEIN |
| Bpl_scaf_7423-4.0 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_7423-4.2 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
| Bpl_scaf_7423-5.29 | |
| Bpl_scaf_7423-6.3 | DNA POLYMERASE TYPE-X FAMILY MEMBER |
| Bpl_scaf_7423-6.5 | DNA POLYMERASE TYPE-X FAMILY MEMBER |
| Bpl_scaf_7423-6.6 | COPPER HOMEOSTASIS PROTEIN CUTC |
| Bpl_scaf_7423-6.8 | |
| Bpl_scaf_7423-7.3 | |
| Bpl_scaf_7423-7.4 | |
| Bpl_scaf_7423-7.8 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 |
| Bpl_scaf_7423-8.21 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Bpl_scaf_7423-8.22 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| Bpl_scaf_7423-8.24 | RING ZINC FINGER PROTEIN |
| Bpl_scaf_7423-9.1 | |
| Bpl_scaf_7434-1.4 | |
| Bpl_scaf_7434-1.5 | INNER MEMBRANE PROTEIN YEDE |
| Bpl_scaf_7445-0.0 | |
| Bpl_scaf_7445-0.1 | |
| Bpl_scaf_7446-0.2 | |
| Bpl_scaf_7446-1.3 | VILLIN |
| Bpl_scaf_7456-0.0 | HILLARIN |
| Bpl_scaf_7463-0.1 | ANGIOTENSIN-CONVERTING ENZYME |
| Bpl_scaf_7463-1.13 | |
| Bpl_scaf_7463-1.4 | HRAS-LIKE SUPPRESSOR - RELATED |
| Bpl_scaf_7463-1.7 | ASPARTYL PROTEASE DDI-RELATED |
| Bpl_scaf_7469-0.0 | CADHERIN-87A |
| Bpl_scaf_7473-0.11 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN |
| Bpl_scaf_7473-0.18 | BOLA TRANSCRIPTION REGULATOR |
| Bpl_scaf_7473-0.19 | ACYL-COA DEHYDROGENASE |
| Bpl_scaf_7473-0.20 | |
| Bpl_scaf_7473-1.18 | TESMIN/TSO1-RELATED |
| Bpl_scaf_7473-1.19 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 |
| Bpl_scaf_7473-1.2 |
