About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_7524-9.11
Bpl_scaf_7524-9.16THREE PRIME REPAIR EXONUCLEASE 1, 2
Bpl_scaf_7524-9.2LD33804P
Bpl_scaf_7524-9.3LD33804P
Bpl_scaf_7524-9.4
Bpl_scaf_7525-0.2
Bpl_scaf_7528-0.3LITHOSTATHINE
Bpl_scaf_7529-0.2
Bpl_scaf_753-0.0BONUS, ISOFORM C-RELATED
Bpl_scaf_753-0.3
Bpl_scaf_7531-0.0
Bpl_scaf_7531-0.2REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_7533-0.0REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_7534-0.28GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
Bpl_scaf_7534-1.1
Bpl_scaf_7534-1.13PROTEIN STAR
Bpl_scaf_7534-1.18
Bpl_scaf_7534-1.3
Bpl_scaf_7534-1.6
Bpl_scaf_7534-1.7
Bpl_scaf_7534-2.10
Bpl_scaf_7534-2.21
Bpl_scaf_7534-2.23
Bpl_scaf_7534-2.29ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
Bpl_scaf_7534-2.9BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_7632-0.11GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
Bpl_scaf_7632-0.3GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
Bpl_scaf_7632-0.9
Bpl_scaf_7632-1.7MAP/MICROTUBULE AFFINITY-REGULATING KINASE
Bpl_scaf_7632-1.8GPI-ANCHORED PROTEIN P137
Bpl_scaf_7632-2.6
Bpl_scaf_7632-2.7CAT EYE SYNDROME CRITICAL REGION PROTEIN 2
Bpl_scaf_7632-3.15UNCHARACTERIZED
Bpl_scaf_7632-3.2
Bpl_scaf_7632-3.6COLLAGEN ALPHA
Bpl_scaf_7632-4.5
Bpl_scaf_7632-4.9N-ACETYLGALACTOSAMINYLTRANSFERASE
Bpl_scaf_7632-5.13CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Bpl_scaf_7632-5.14
Bpl_scaf_7632-5.16
Bpl_scaf_7637-0.5
Bpl_scaf_7641-0.11FIBRINOGEN ALPHA CHAIN
Bpl_scaf_7642-0.2DIACYLGLYCEROL LIPASE HOMOLOG-RELATED
Bpl_scaf_7642-1.0
Bpl_scaf_7642-2.1LD33804P
Bpl_scaf_7642-2.11L1 TRANSPOSABLE ELEMENT-RELATED
Bpl_scaf_7642-2.12POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Bpl_scaf_7642-2.15PERFORIN-LIKE PROTEIN 1
Bpl_scaf_7642-2.17ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_7642-2.4
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