Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_7318-2.9 | ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_7318-3.4 | ORF PROTEIN |
| Bpl_scaf_7318-4.33 | LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN |
| Bpl_scaf_7318-4.34 | REELIN |
| Bpl_scaf_7318-4.35 | REELIN |
| Bpl_scaf_7318-4.36 | ORIGIN RECOGNITION COMPLEX SUBUNIT 5 |
| Bpl_scaf_7318-5.11 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_7318-6.2 | ELKS/RAB6-INTERACTING/CAST PROTEIN |
| Bpl_scaf_7318-6.4 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
| Bpl_scaf_7318-6.6 | DNA LIGASE |
| Bpl_scaf_7333-0.1 | AGAP001331-PA-RELATED |
| Bpl_scaf_7343-0.1 | |
| Bpl_scaf_7343-0.12 | INTERFERON-INDUCIBLE GTPASE |
| Bpl_scaf_7343-0.3 | |
| Bpl_scaf_7349-0.12 | REVERSE TRANSCRIPTASES |
| Bpl_scaf_7349-0.5 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_7359-0.14 | |
| Bpl_scaf_7359-0.16 | |
| Bpl_scaf_7359-0.17 | ALCOHOL DEHYDROGENASE |
| Bpl_scaf_7359-0.18 | ALCOHOL DEHYDROGENASE |
| Bpl_scaf_7359-0.3 | SEVEN TRANSMEMBRANE PROTEIN 1-RELATED |
| Bpl_scaf_7385-0.6 | |
| Bpl_scaf_739-0.1 | UBIQUITIN-PROTEIN LIGASE E3C |
| Bpl_scaf_7395-0.11 | SI:CH211-108C17.2-RELATED-RELATED |
| Bpl_scaf_7395-0.4 | SI:CH211-108C17.2-RELATED-RELATED |
| Bpl_scaf_7397-0.18 | OS10G0105400 PROTEIN |
| Bpl_scaf_7407-0.0 | |
| Bpl_scaf_7407-0.1 | |
| Bpl_scaf_7407-0.9 | HEAT SHOCK 70 KDA PROTEIN 14 |
| Bpl_scaf_7408-1.2 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_7408-2.11 | HIGH-AFFINITY NITRATE TRANSPORTER 2.3 |
| Bpl_scaf_7408-2.6 | 1,4-ALPHA-GLUCAN-BRANCHING ENZYME |
| Bpl_scaf_7408-3.1 | SERINE-THREONINE PROTEIN KINASE |
| Bpl_scaf_7408-3.5 | AKT1 SUBSTRATE 1 PROTEIN |
| Bpl_scaf_7408-4.10 | MOLTING PROTEIN MLT-4 |
| Bpl_scaf_7408-4.16 | PROTEIN CBG21859 |
| Bpl_scaf_7408-4.8 | ZGC:172139 |
| Bpl_scaf_7408-5.11 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| Bpl_scaf_7408-6.5 | AMMONIUM TRANSPORTER |
| Bpl_scaf_7408-7.10 | CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN |
| Bpl_scaf_7408-7.8 | PROTEIN CBG21859 |
| Bpl_scaf_7408-7.9 | |
| Bpl_scaf_7418-0.0 | |
| Bpl_scaf_7418-0.10 | |
| Bpl_scaf_7418-0.16 | |
| Bpl_scaf_7418-0.21 | |
| Bpl_scaf_7418-0.24 | ANOCTAMIN |
| Bpl_scaf_7418-0.35 | |
| Bpl_scaf_7418-0.38 | |
| Bpl_scaf_7418-0.9 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
