About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_6911-3.11
Bpl_scaf_6911-3.14SH3 DOMAIN-CONTAINING
Bpl_scaf_6911-3.9
Bpl_scaf_6913-0.0
Bpl_scaf_6913-0.4
Bpl_scaf_6914-0.3
Bpl_scaf_6917-0.2
Bpl_scaf_6920-0.0
Bpl_scaf_6921-0.0
Bpl_scaf_6921-0.3
Bpl_scaf_6921-0.5
Bpl_scaf_6921-1.4
Bpl_scaf_6921-1.6
Bpl_scaf_6921-2.0
Bpl_scaf_6921-2.13DEATH DOMAIN-CONTAINING PROTEIN
Bpl_scaf_6921-3.10
Bpl_scaf_6921-3.11RING ZINC FINGER
Bpl_scaf_6924-0.1
Bpl_scaf_6925-0.7
Bpl_scaf_6929-0.2
Bpl_scaf_6932-0.10STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL
Bpl_scaf_6932-0.11FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
Bpl_scaf_6932-1.3
Bpl_scaf_6932-2.1CYTOCHROME P450 FAMILY 4
Bpl_scaf_6932-3.0NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Bpl_scaf_6932-3.2AGAP001331-PA-RELATED
Bpl_scaf_6932-3.3NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Bpl_scaf_6938-0.10
Bpl_scaf_6938-0.9
Bpl_scaf_6948-0.0
Bpl_scaf_6948-0.4REPLICATION FACTOR A 1, RFA1
Bpl_scaf_695-0.0
Bpl_scaf_6957-0.18
Bpl_scaf_696-0.0CEREBELLIN-RELATED
Bpl_scaf_697-0.1PBS LYASE HEAT-LIKE PROTEIN
Bpl_scaf_698-0.1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Bpl_scaf_6985-0.12
Bpl_scaf_6985-0.13
Bpl_scaf_700-0.3
Bpl_scaf_7009-0.0P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE
Bpl_scaf_701-0.0
Bpl_scaf_7014-0.6SCHLAFEN
Bpl_scaf_702-0.7RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
Bpl_scaf_702-0.8NUCLEAR PORE GLYCOPROTEIN P62-RELATED
Bpl_scaf_702-1.6REGULATOR OF CHROMOSOME CONDENSATION
Bpl_scaf_702-2.10VPRBP PROTEIN-RELATED
Bpl_scaf_702-2.11VPRBP PROTEIN-RELATED
Bpl_scaf_702-2.8
Bpl_scaf_702-2.9VPRBP PROTEIN-RELATED
Bpl_scaf_702-3.11GLYCOSYL HYDROLASE
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