Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_702-3.13 | |
| Bpl_scaf_7023-0.6 | LEUCYL-TRNA SYNTHETASE |
| Bpl_scaf_7023-0.7 | FATTY ACID ACYL TRANSFERASE-RELATED |
| Bpl_scaf_7028-0.0 | |
| Bpl_scaf_7043-0.0 | |
| Bpl_scaf_7043-0.14 | |
| Bpl_scaf_7043-0.4 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_7061-0.0 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_7061-0.1 | |
| Bpl_scaf_7079-0.4 | XK-RELATED PROTEIN |
| Bpl_scaf_7079-1.10 | BILIVERDIN REDUCTASE A |
| Bpl_scaf_7079-1.17 | |
| Bpl_scaf_7079-2.10 | DNA EXCISION REPAIR PROTEIN ERCC-8 |
| Bpl_scaf_7079-2.11 | DIOXYGENASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G02910)-RELATED |
| Bpl_scaf_7079-2.12 | DIOXYGENASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G02910)-RELATED |
| Bpl_scaf_7079-2.14 | RNA 3' TERMINAL PHOSPHATE CYCLASE |
| Bpl_scaf_7079-2.3 | |
| Bpl_scaf_7079-2.31 | GLYCOSYLTRANSFERASE |
| Bpl_scaf_7079-2.6 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| Bpl_scaf_7079-3.11 | KPL2-RELATED |
| Bpl_scaf_7079-3.17 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
| Bpl_scaf_7079-3.18 | |
| Bpl_scaf_7079-3.5 | LIN-24 (TWENTY-FOUR) LIKE |
| Bpl_scaf_7079-4.28 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2D |
| Bpl_scaf_7079-4.29 | - |
| Bpl_scaf_7079-4.30 | NG37 |
| Bpl_scaf_7079-4.32 | - |
| Bpl_scaf_7079-4.41 | |
| Bpl_scaf_7080-0.2 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_7091-0.3 | UNCHARACTERIZED |
| Bpl_scaf_7091-1.8 | RICIN B-TYPE LECTIN DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_7091-1.9 | RIBONUCLEASE |
| Bpl_scaf_7091-2.14 | RICIN B-TYPE LECTIN DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_7091-2.15 | RICIN B-TYPE LECTIN DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_710-0.10 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_710-0.11 | |
| Bpl_scaf_710-0.9 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_7113-0.2 | |
| Bpl_scaf_7113-0.3 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_7118-0.2 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_7118-0.3 | |
| Bpl_scaf_7129-0.2 | NUCLEAR RECEPTOR BINDING FACTOR 2 |
| Bpl_scaf_7129-0.3 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_7129-0.5 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_713-0.7 | IMPORTIN BETA |
| Bpl_scaf_713-0.8 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
| Bpl_scaf_713-1.17 | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE |
| Bpl_scaf_713-1.19 | CEREBELLIN-RELATED |
| Bpl_scaf_713-1.6 | CEREBELLIN-RELATED |
| Bpl_scaf_713-3.2 | GUANYLYL CYCLASE |
