Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_6758-2.6 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_680-0.12 | |
| Bpl_scaf_680-0.8 | |
| Bpl_scaf_680-0.9 | |
| Bpl_scaf_680-1.11 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_680-1.8 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
| Bpl_scaf_681-0.13 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 |
| Bpl_scaf_681-0.6 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8 |
| Bpl_scaf_681-1.1 | SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT |
| Bpl_scaf_681-3.14 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM D |
| Bpl_scaf_681-5.3 | |
| Bpl_scaf_681-5.8 | |
| Bpl_scaf_681-5.9 | TETRASPANIN |
| Bpl_scaf_681-6.14 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| Bpl_scaf_681-6.15 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| Bpl_scaf_681-6.16 | |
| Bpl_scaf_681-7.4 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| Bpl_scaf_681-7.5 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Bpl_scaf_681-8.10 | |
| Bpl_scaf_681-8.11 | |
| Bpl_scaf_681-8.12 | PROTEIN MAELSTROM HOMOLOG |
| Bpl_scaf_681-8.13 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
| Bpl_scaf_681-9.20 | |
| Bpl_scaf_681-9.21 | |
| Bpl_scaf_681-9.25 | |
| Bpl_scaf_681-9.4 | |
| Bpl_scaf_682-0.2 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_682-0.3 | DED DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_689-0.1 | |
| Bpl_scaf_6900-0.14 | PROTEASE M1 ZINC METALLOPROTEASE |
| Bpl_scaf_6900-0.15 | BCS1 AAA-TYPE ATPASE |
| Bpl_scaf_6900-0.19 | TETRATRICOPEPTIDE-LIKE HELICAL |
| Bpl_scaf_6900-0.30 | COMPLEX I INTERMEDIATE-ASSOCIATED PROTEIN 30 |
| Bpl_scaf_6900-0.33 | GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
| Bpl_scaf_6901-1.10 | HL01030P-RELATED |
| Bpl_scaf_6901-3.1 | |
| Bpl_scaf_6901-3.12 | |
| Bpl_scaf_6901-3.14 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_6901-4.0 | |
| Bpl_scaf_6901-6.4 | MYOSIN |
| Bpl_scaf_6901-7.5 | CHITIN SYNTHASE |
| Bpl_scaf_6909-0.6 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_691-0.6 | |
| Bpl_scaf_691-1.3 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_691-2.0 | |
| Bpl_scaf_691-3.10 | |
| Bpl_scaf_691-3.8 | |
| Bpl_scaf_6911-1.4 | |
| Bpl_scaf_6911-2.0 | |
| Bpl_scaf_6911-3.10 | COLLAGEN ALPHA |
