Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_713-3.3 | UNCHARACTERIZED |
| Bpl_scaf_713-3.5 | |
| Bpl_scaf_713-3.7 | |
| Bpl_scaf_7138-0.0 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Bpl_scaf_7138-0.2 | ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 |
| Bpl_scaf_715-0.1 | |
| Bpl_scaf_7150-0.0 | |
| Bpl_scaf_7150-0.1 | |
| Bpl_scaf_7150-0.8 | |
| Bpl_scaf_716-0.0 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Bpl_scaf_7166-0.5 | ATP-DEPENDENT DNA HELICASE |
| Bpl_scaf_7178-0.23 | TYROSINE-PROTEIN KINASE |
| Bpl_scaf_7178-0.5 | HEAVY PROTEIN, PUTATIVE-RELATED |
| Bpl_scaf_7178-0.7 | PROTEIN ENHANCER OF SEVENLESS 2B |
| Bpl_scaf_7178-0.8 | SOMETHING ABOUT SILENCING PROTEIN 10-RELATED |
| Bpl_scaf_7196-0.1 | GOLGI-ASSOCIATED PDZ AND COILED-COIL MOTIF-CONTAINING |
| Bpl_scaf_7212-0.11 | |
| Bpl_scaf_7212-0.20 | UNCHARACTERIZED |
| Bpl_scaf_7213-0.1 | |
| Bpl_scaf_7213-0.7 | |
| Bpl_scaf_7213-1.0 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_7213-3.10 | BAT2 HLA-B-ASSOCIATED TRANSCRIPT 2 |
| Bpl_scaf_7213-3.11 | OLIGOSACCHARYLTRANSFERASE COMPLEX SUBUNIT OSTC |
| Bpl_scaf_7213-3.9 | ZINC FINGER, ZZ DOMAIN CONTAINING 3 |
| Bpl_scaf_7213-4.14 | PAIRED MESODERM HOMEOBOX PROTEIN 1-RELATED |
| Bpl_scaf_7213-5.10 | ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 |
| Bpl_scaf_7213-5.9 | HEPARAN SULFATE 2-O-SULFOTRANSFERASE |
| Bpl_scaf_7224-0.0 | |
| Bpl_scaf_7234-0.15 | NEPHRIN |
| Bpl_scaf_7234-0.8 | |
| Bpl_scaf_7234-0.9 | |
| Bpl_scaf_724-0.5 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Bpl_scaf_724-0.6 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Bpl_scaf_724-1.9 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Bpl_scaf_724-3.0 | |
| Bpl_scaf_724-3.1 | |
| Bpl_scaf_724-3.6 | |
| Bpl_scaf_725-0.10 | MESENCHYME-SPECIFIC CELL SURFACE GLYCOPROTEIN |
| Bpl_scaf_725-0.7 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| Bpl_scaf_725-1.5 | MESENCHYME-SPECIFIC CELL SURFACE GLYCOPROTEIN |
| Bpl_scaf_725-1.6 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_725-10.3 | |
| Bpl_scaf_725-10.4 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT |
| Bpl_scaf_725-11.5 | UNCHARACTERIZED |
| Bpl_scaf_725-12.4 | SPARC OSTEONECTIN |
| Bpl_scaf_725-12.5 | |
| Bpl_scaf_725-2.0 | |
| Bpl_scaf_725-2.2 | |
| Bpl_scaf_725-3.26 | USE1-LIKE PROTEIN |
| Bpl_scaf_725-3.6 | WNT RELATED |
