Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_7646-0.1 | |
| Bpl_scaf_7647-0.0 | ZGC:195170 |
| Bpl_scaf_7647-0.4 | SI:CH211-108C17.2-RELATED-RELATED |
| Bpl_scaf_7649-0.2 | FIBRILLIN-RELATED |
| Bpl_scaf_7650-0.1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| Bpl_scaf_7651-0.0 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_7651-0.1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_7653-0.10 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A |
| Bpl_scaf_7653-0.27 | |
| Bpl_scaf_7653-0.9 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_7653-1.10 | H4 D10S170 PROTEIN-RELATED |
| Bpl_scaf_7653-1.8 | CERAMIDASE |
| Bpl_scaf_7653-1.9 | AGAP005361-PA |
| Bpl_scaf_7653-2.14 | PLECKSTRIN HOMOLOGY PH DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_7653-2.15 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
| Bpl_scaf_7653-3.13 | EXPORTIN-6 |
| Bpl_scaf_7653-3.15 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
| Bpl_scaf_7653-3.16 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
| Bpl_scaf_7653-3.18 | MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM22 |
| Bpl_scaf_7656-0.4 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| Bpl_scaf_7657-0.4 | |
| Bpl_scaf_7658-0.5 | |
| Bpl_scaf_766-0.2 | |
| Bpl_scaf_7660-0.7 | SACSIN |
| Bpl_scaf_7661-0.3 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_7661-0.4 | |
| Bpl_scaf_7664-0.7 | AAA DOMAIN-CONTAINING |
| Bpl_scaf_7664-0.8 | FATTY-ACID AMIDE HYDROLASE |
| Bpl_scaf_7664-1.12 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
| Bpl_scaf_7664-1.9 | UBIQUITIN THIOESTERASE |
| Bpl_scaf_7664-2.1 | SAM-DOMAIN, SH3 AND NUCLEAR LOCALIZATION SIGNALS PROTEIN RELATED |
| Bpl_scaf_7664-3.13 | MALE FERTILITY FACTOR KL5 |
| Bpl_scaf_7664-3.14 | CYTOCHROME B5 REDUCTASE 4 FAMILY MEMBER |
| Bpl_scaf_7667-0.12 | - |
| Bpl_scaf_7667-0.4 | - |
| Bpl_scaf_7673-0.3 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
| Bpl_scaf_7678-0.0 | CYSTATIN FAMILY MEMBER |
| Bpl_scaf_7690-0.5 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Bpl_scaf_7690-1.0 | CHITINASE |
| Bpl_scaf_7690-1.5 | CHITINASE |
| Bpl_scaf_7690-11.0 | |
| Bpl_scaf_7690-12.2 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
| Bpl_scaf_7690-2.6 | ENVOPLAKIN |
| Bpl_scaf_7690-2.7 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
| Bpl_scaf_7690-3.12 | ENVOPLAKIN |
| Bpl_scaf_7690-3.15 | INOSITOL POLYPHOSPHATE KINASE |
| Bpl_scaf_7690-4.6 | DNA PRIMASE SMALL SUBUNIT |
| Bpl_scaf_7690-6.3 | CHITIN SYNTHASE |
| Bpl_scaf_7690-7.13 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_7690-7.37 | CHITIN SYNTHASE |
