Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_031169-T1 | |
LLU|FUN_031170-T1 | |
LLU|FUN_031171-T1 | TUMOR ENDOTHELIAL MARKER 7 RELATED |
LLU|FUN_031172-T1 | TUMOR ENDOTHELIAL MARKER 7 RELATED |
LLU|FUN_031173-T1 | |
LLU|FUN_031174-T1 | |
LLU|FUN_031175-T1 | |
LLU|FUN_031176-T1 | |
LLU|FUN_031177-T1 | UNCHARACTERIZED |
LLU|FUN_031178-T1 | |
LLU|FUN_031179-T1 | |
LLU|FUN_031180-T1 | THYMIDYLATE SYNTHASE 1 |
LLU|FUN_031181-T1 | SI:CH211-156B7.4 |
LLU|FUN_031182-T1 | SUPPRESSOR OF VARIEGATION 4-20-RELATED |
LLU|FUN_031183-T1 | NUCLEAR BODY PROTEIN SP140 |
LLU|FUN_031184-T1 | TRANSCRIPTION INTERMEDIARY FACTOR |
LLU|FUN_031185-T1 | CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED |
LLU|FUN_031186-T1 | |
LLU|FUN_031187-T1 | |
LLU|FUN_031188-T1 | |
LLU|FUN_031189-T1 | CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED |
LLU|FUN_031190-T1 | CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED |
LLU|FUN_031191-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
LLU|FUN_031192-T1 | CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED |
LLU|FUN_031193-T1 | CCR4-NOT TRANSCRIPTION COMPLEX RELATED |
LLU|FUN_031194-T1 | CCR4-NOT TRANSCRIPTION COMPLEX RELATED |
LLU|FUN_031195-T1 | |
LLU|FUN_031196-T1 | |
LLU|FUN_031197-T1 | |
LLU|FUN_031198-T1 | |
LLU|FUN_031199-T1 | |
LLU|FUN_031200-T1 | |
LLU|FUN_031201-T1 | |
LLU|FUN_031202-T1 | |
LLU|FUN_031203-T1 | |
LLU|FUN_031204-T1 | GALACTOSIDE 2-L-FUCOSYLTRANSFERASE |
LLU|FUN_031205-T1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
LLU|FUN_031206-T1 | DNA REPAIR PROTEIN RAD51 HOMOLOG 4 |
LLU|FUN_031207-T1 | CULLIN |
LLU|FUN_031208-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
LLU|FUN_031209-T1 | SERINE/THREONINE-PROTEIN KINASE |
LLU|FUN_031210-T1 | A-KINASE ANCHOR PROTEINS |
LLU|FUN_031211-T1 | |
LLU|FUN_031212-T1 | COILIN |
LLU|FUN_031213-T1 | PLASMINOGEN-RELATED |
LLU|FUN_031214-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIA |
LLU|FUN_031215-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIA |
LLU|FUN_031216-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIA |
LLU|FUN_031217-T1 | |
LLU|FUN_031218-T1 | WD REPEAT-CONTAINING PROTEIN POP1 |