About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8025021.1NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE
CAI8025022.1
CAI8025023.1
CAI8025026.1TRANSCRIPTIONAL REGULATORY PROTEIN
CAI8025025.1TRANSCRIPTIONAL REGULATORY PROTEIN
CAI8025024.1TRANSCRIPTIONAL REGULATORY PROTEIN
CAI8025027.1DISULFIDE OXIDOREDUCTASE
CAI8025029.1DISULFIDE OXIDOREDUCTASE
CAI8025028.1DISULFIDE OXIDOREDUCTASE
CAI8025030.1DISULFIDE OXIDOREDUCTASE
CAI8025031.1DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX
CAI8025032.1OCTANOYLTRANSFERASE
CAI8025033.1PAR-6-RELATED
CAI8025039.1HEMOGLOBINASE FAMILY MEMBER
CAI8025038.1HEMOGLOBINASE FAMILY MEMBER
CAI8025037.1HEMOGLOBINASE FAMILY MEMBER
CAI8025036.1HEMOGLOBINASE FAMILY MEMBER
CAI8025035.1HEMOGLOBINASE FAMILY MEMBER
CAI8025034.1
CAI8025040.1HEMOGLOBINASE FAMILY MEMBER
CAI8025041.1HEMOGLOBINASE FAMILY MEMBER
CAI8025042.1HEMOGLOBINASE FAMILY MEMBER
CAI8025043.1HEMOGLOBINASE FAMILY MEMBER
CAI8025044.1TUBULIN
CAI8025045.1TUBULIN
CAI8025050.1
CAI8025049.1DISRUPTED IN SCHIZOPHRENIA 1 PROTEIN
CAI8025051.1DISRUPTED IN SCHIZOPHRENIA 1 PROTEIN
CAI8025047.1DISRUPTED IN SCHIZOPHRENIA 1 PROTEIN
CAI8025048.1DISRUPTED IN SCHIZOPHRENIA 1 PROTEIN
CAI8025046.1DISRUPTED IN SCHIZOPHRENIA 1 PROTEIN
CAI8025052.1
CAI8025053.1DISRUPTED IN SCHIZOPHRENIA 1 PROTEIN
CAI8025054.1DISRUPTED IN SCHIZOPHRENIA 1 PROTEIN
CAI8025055.1DISRUPTED IN SCHIZOPHRENIA 1 PROTEIN
CAI8025056.1NUDIX HYDROLASE
CAI8025057.1F-BOX ONLY PROTEIN 48-RELATED
CAI8025059.1WD40 REPEAT PROTEINPRL1/PRL2-RELATED
CAI8025060.1WD40 REPEAT PROTEINPRL1/PRL2-RELATED
CAI8025058.1WD40 REPEAT PROTEINPRL1/PRL2-RELATED
CAI8025061.1WD40 REPEAT PROTEINPRL1/PRL2-RELATED
CAI8025062.1
CAI8025065.1
CAI8025063.1
CAI8025064.1
CAI8025066.1
CAI8025067.1
CAI8025068.1
CAI8025069.1
CAI8025070.1
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