About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8024721.1
CAI8024722.1RIBOSOME BIOGENESIS REGULATORY PROTEIN
CAI8024723.1RIBOSOME BIOGENESIS REGULATORY PROTEIN
CAI8024724.1RIBOSOME BIOGENESIS REGULATORY PROTEIN
CAI8024725.1RIBOSOME BIOGENESIS REGULATORY PROTEIN
CAI8024726.1LATE ENDOSOMAL/LYSOSOMAL MP1 INTERACTING PROTEIN
CAI8024727.1LATE ENDOSOMAL/LYSOSOMAL MP1 INTERACTING PROTEIN
CAI8024728.1
CAI8024729.1
CAI8024730.1
CAI8024731.1
CAI8024733.1
CAI8024732.1
CAI8024735.1
CAI8024734.1
CAI8024736.1
CAI8024737.1
CAI8024738.1
CAI8024739.1
CAI8024740.1
CAI8024741.1ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
CAI8024742.1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
CAI8024743.1ZINC FINGERS AND HOMEOBOXES PROTEIN 1, ISOFORM 2
CAI8024745.1REGULATOR OF CHROMOSOME CONDENSATION
CAI8024744.1REGULATOR OF CHROMOSOME CONDENSATION
CAI8024746.1REGULATOR OF CHROMOSOME CONDENSATION
CAI8024747.1REGULATOR OF CHROMOSOME CONDENSATION
CAI8024748.1REGULATOR OF CHROMOSOME CONDENSATION
CAI8024749.1REGULATOR OF CHROMOSOME CONDENSATION
CAI8024750.1REGULATOR OF CHROMOSOME CONDENSATION
CAI8024752.1SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
CAI8024751.1SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
CAI8024754.1
CAI8024759.1
CAI8024757.1
CAI8024758.1
CAI8024756.1
CAI8024755.1
CAI8024753.1
CAI8024760.1
CAI8024761.1
CAI8024762.1
CAI8024763.1
CAI8024764.1
CAI8024765.1KICSTOR COMPLEX PROTEIN KAPTIN
CAI8024767.1PROTEIN TRANSPORT PROTEIN SEC23
CAI8024766.1PROTEIN TRANSPORT PROTEIN SEC23
CAI8024768.1
CAI8024770.1PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE
CAI8024769.1SODIUM/CALCIUM EXCHANGER
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