About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8024820.1UNCHARACTERIZED
CAI8024824.1TEKTIN
CAI8024822.1TEKTIN
CAI8024826.1TEKTIN
CAI8024825.1TEKTIN
CAI8024823.1TEKTIN
CAI8024828.1TEKTIN
CAI8024827.1TEKTIN
CAI8024829.1MATRIX PROTEIN, PUTATIVE-RELATED
CAI8024830.1RIBOSE-5-PHOSPHATE ISOMERASE
CAI8024831.1RIBOSE-5-PHOSPHATE ISOMERASE
CAI8024832.1RIBOSE-5-PHOSPHATE ISOMERASE
CAI8024834.1EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
CAI8024833.1
CAI8024835.1KELCH REPEAT DOMAIN
CAI8024836.1ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5
CAI8024837.1ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5
CAI8024839.1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
CAI8024840.1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
CAI8024838.1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
CAI8024842.1BETA-AMYLOID BINDING PROTEIN-RELATED
CAI8024841.1BETA-AMYLOID BINDING PROTEIN-RELATED
CAI8024845.1SI:CH211-189E2.2
CAI8024844.1SI:CH211-189E2.2
CAI8024843.1SI:CH211-189E2.2
CAI8024848.1SI:CH211-189E2.2
CAI8024847.1SI:CH211-189E2.2
CAI8024850.1SI:CH211-189E2.2
CAI8024849.1SI:CH211-189E2.2
CAI8024846.1SCP160
CAI8024851.1LEUCINE RICH REPEAT PROTEIN
CAI8024852.1RAP GTPASE-ACTIVATING PROTEIN
CAI8024853.1
CAI8024854.1UNCHARACTERIZED
CAI8024855.1UNCHARACTERIZED
CAI8024856.1UBIQUITIN-ASSOCIATED AND SH3 DOMAIN-CONTAINING BA-RELATED
CAI8024857.1
CAI8024858.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
CAI8024859.1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
CAI8024860.1
CAI8024862.1POTE ANKYRIN DOMAIN
CAI8024861.1POTE ANKYRIN DOMAIN
CAI8024863.1
CAI8024864.1INTRAFLAGELLAR TRANSPORT PROTEIN 74 HOMOLOG
CAI8024866.1
CAI8024865.1
CAI8024868.1UNCHARACTERIZED
CAI8024867.1UNCHARACTERIZED
CAI8024869.1SYNAPTOBREVIN FAMILY MEMBER
CAI8024871.1MAP KINASE KINASE KINASE SSK2-RELATED-RELATED
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