About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 546 547 548 549 550 551 552 553 554 555 Forward> Last>>        1226 pages in total

Gene IDDescription
CAI8024921.1
CAI8024922.1GMP SYNTHASE-RELATED
CAI8024923.1AMINOTRANSFERASE CLASS V
CAI8024924.1RNA POLYMERASE ECF-TYPE SIGMA FACTO
CAI8024925.1
CAI8024926.1
CAI8024927.1PROTEIN SMF
CAI8024931.1
CAI8024928.1
CAI8024929.1
CAI8024930.1
CAI8024932.1
CAI8024933.1REGULATOR-RELATED
CAI8024934.1
CAI8024935.1
CAI8024936.1SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER
CAI8024937.13-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN
CAI8024938.1
CAI8024939.1WSCD FAMILY MEMBER CG9164
CAI8024940.1
CAI8024941.1TNF RECEPTOR ASSOCIATED FACTOR
CAI8024942.1
CAI8024943.1
CAI8024944.1PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
CAI8024945.1PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
CAI8024947.1
CAI8024946.1
CAI8024948.1
CAI8024949.1EXPRESSED PROTEIN
CAI8024950.1DNA GYRASE/TOPOISOMERASE SUBUNIT B
CAI8024951.1
CAI8024952.1METHYLTRANSFERASE
CAI8024953.1GUANYLYL CYCLASE
CAI8024955.1GUANYLYL CYCLASE
CAI8024954.1
CAI8024956.1
CAI8024957.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
CAI8024960.1
CAI8024959.1
CAI8024958.1
CAI8024964.1GUANINE NUCLEOTIDE EXCHANGE FACTOR
CAI8024963.1
CAI8024962.1
CAI8024961.1
CAI8024965.1
CAI8024966.1GUANINE NUCLEOTIDE EXCHANGE FACTOR
CAI8024967.1GUANINE NUCLEOTIDE EXCHANGE FACTOR
CAI8024969.1
CAI8024968.1
CAI8024970.1
TOP