About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8024971.1RAPSYN-RELATED
CAI8024972.1RAPSYN-RELATED
CAI8024973.1RNA POLYMERASE II-ASSOCIATED PROTEIN 3
CAI8024974.1
CAI8024975.1
CAI8024976.1
CAI8024977.1
CAI8024979.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8024978.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8024980.1TYROSINE-PROTEIN KINASE
CAI8024981.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8024983.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
CAI8024984.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
CAI8024982.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
CAI8024985.1
CAI8024986.1SODIUM/CALCIUM EXCHANGER
CAI8024990.1SODIUM/CALCIUM EXCHANGER
CAI8024989.1SODIUM/CALCIUM EXCHANGER
CAI8024988.1SODIUM/CALCIUM EXCHANGER
CAI8024987.1SODIUM/CALCIUM EXCHANGER
CAI8024994.1SODIUM/CALCIUM EXCHANGER
CAI8024993.1SODIUM/CALCIUM EXCHANGER
CAI8024992.1SODIUM/CALCIUM EXCHANGER
CAI8024991.1SODIUM/CALCIUM EXCHANGER
CAI8024995.1
CAI8024996.1IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
CAI8025001.1SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN
CAI8025000.1SPERMIDINE/SPERMINE SYNTHASE
CAI8024999.1SPERMIDINE/SPERMINE SYNTHASE
CAI8024998.1
CAI8024997.1
CAI8025002.1SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN
CAI8025003.1SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN
CAI8025004.1
CAI8025009.1SODIUM/CALCIUM EXCHANGER
CAI8025008.1SODIUM/CALCIUM EXCHANGER
CAI8025007.1SODIUM/CALCIUM EXCHANGER
CAI8025006.1SODIUM/CALCIUM EXCHANGER
CAI8025005.1SODIUM/CALCIUM EXCHANGER
CAI8025010.1SODIUM/CALCIUM EXCHANGER
CAI8025011.1SODIUM/CALCIUM EXCHANGER
CAI8025012.1SODIUM/CALCIUM EXCHANGER
CAI8025013.1BONUS, ISOFORM C-RELATED
CAI8025014.1
CAI8025015.1
CAI8025016.1
CAI8025017.1
CAI8025018.1QUINONE OXIDOREDUCTASE PIG3-RELATED
CAI8025019.1ATP DEPENDENT LON PROTEASE FAMILY MEMBER
CAI8025020.1FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA
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