About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8024671.1
CAI8024672.1SERINE PROTEASE FAMILY S1C HTRA-RELATED
CAI8024673.1POLYCOMB GROUP PROTEIN
CAI8024675.1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
CAI8024674.1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
CAI8024676.1SPRY DOMAIN CONTAINING SOCS BOX PROTEIN
CAI8024677.1
CAI8024678.1CHARGED MULTIVESICULAR BODY PROTEIN
CAI8024679.1KELCH PROTEIN
CAI8024680.1KELCH PROTEIN
CAI8024682.1UNCHARACTERIZED
CAI8024681.1UNCHARACTERIZED
CAI8024683.1
CAI8024684.1
CAI8024685.1GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN
CAI8024686.1GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN
CAI8024687.1GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN
CAI8024688.1RIBONUCLEASE P SUBUNIT P21
CAI8024690.1RIBONUCLEASE P SUBUNIT P21
CAI8024689.1RIBONUCLEASE P SUBUNIT P21
CAI8024692.1PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL
CAI8024691.1SLR5058 PROTEIN
CAI8024693.1
CAI8024694.1SLR5058 PROTEIN
CAI8024695.1SLR5058 PROTEIN
CAI8024697.1DNA LIGASE 1/3 FAMILY MEMBER
CAI8024696.1DNA LIGASE 1/3 FAMILY MEMBER
CAI8024703.1UNC-13-4A, ISOFORM B
CAI8024702.1UNC-13-4A, ISOFORM B
CAI8024701.1UNC-13-4A, ISOFORM B
CAI8024700.1UNC-13-4A, ISOFORM B
CAI8024699.1
CAI8024698.1
CAI8024704.1UNC-13-4A, ISOFORM B
CAI8024705.1UNC-13-4A, ISOFORM B
CAI8024706.1UNC-13-4A, ISOFORM B
CAI8024707.1UNC-13-4A, ISOFORM B
CAI8024708.1UNC-13-4A, ISOFORM B
CAI8024711.1UNCHARACTERIZED
CAI8024714.1UNCHARACTERIZED
CAI8024713.1UNCHARACTERIZED
CAI8024710.1UNCHARACTERIZED
CAI8024709.1UNCHARACTERIZED
CAI8024715.1UNCHARACTERIZED
CAI8024712.1UNCHARACTERIZED
CAI8024719.1GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
CAI8024718.1GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
CAI8024717.1GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
CAI8024716.1GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
CAI8024720.1GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
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