About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8024771.1SODIUM/CALCIUM EXCHANGER
CAI8024772.1
CAI8024773.1
CAI8024774.1
CAI8024775.1
CAI8024776.1HOMOSERINE O-ACETYLTRANSFERASE
CAI8024781.1DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE
CAI8024780.1DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE
CAI8024779.1DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE
CAI8024778.1DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE
CAI8024777.1
CAI8024782.1BBSOME-INTERACTING PROTEIN 1
CAI8024784.1SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED
CAI8024785.1SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED
CAI8024783.1SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED
CAI8024786.1SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED
CAI8024787.1
CAI8024788.1
CAI8024789.1OS02G0815200 PROTEIN
CAI8024790.1N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER
CAI8024791.1
CAI8024792.1
CAI8024793.1MONOACYLGLYCEROL LIPASE
CAI8024794.1
CAI8024795.1COENZYME Q10 BIOSYNTHESIS PROTEIN 7
CAI8024796.1COENZYME Q10 BIOSYNTHESIS PROTEIN 7
CAI8024798.1COENZYME Q10 BIOSYNTHESIS PROTEIN 7
CAI8024797.1COENZYME Q10 BIOSYNTHESIS PROTEIN 7
CAI8024799.1COENZYME Q10 BIOSYNTHESIS PROTEIN 7
CAI8024801.1UNCHARACTERIZED
CAI8024800.1UNCHARACTERIZED
CAI8024802.1UNCHARACTERIZED
CAI8024803.1ANKYRIN REPEAT FAMILY A
CAI8024804.1ANKYRIN DOMAIN-CONTAINING
CAI8024805.1SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
CAI8024806.1ENDONUCLEASE
CAI8024809.1MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
CAI8024808.1MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
CAI8024807.1
CAI8024810.1
CAI8024811.1
CAI8024812.1
CAI8024814.1
CAI8024813.1
CAI8024815.1
CAI8024816.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
CAI8024817.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
CAI8024818.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60
CAI8024819.1GTP-BINDING
CAI8024821.1UNCHARACTERIZED
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