About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8024870.1MAP KINASE KINASE KINASE SSK2-RELATED-RELATED
CAI8024872.1MAP KINASE KINASE KINASE SSK2-RELATED-RELATED
CAI8024873.1MAP KINASE KINASE KINASE SSK2-RELATED-RELATED
CAI8024875.1MAP KINASE KINASE KINASE SSK2-RELATED-RELATED
CAI8024874.1MAP KINASE KINASE KINASE SSK2-RELATED-RELATED
CAI8024876.1
CAI8024878.1TRIOSEPHOSPHATE ISOMERASE
CAI8024877.1TRIOSEPHOSPHATE ISOMERASE
CAI8024879.1TRIOSEPHOSPHATE ISOMERASE
CAI8024880.1
CAI8024881.1
CAI8024882.1
CAI8024883.1
CAI8024884.1
CAI8024885.1
CAI8024886.1CELL DIVISION CONTROL PROTEIN 6-RELATED
CAI8024887.1IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
CAI8024888.1SODIUM/CALCIUM EXCHANGER
CAI8024892.1UNCHARACTERIZED
CAI8024891.1UNCHARACTERIZED
CAI8024890.1UNCHARACTERIZED
CAI8024889.1UNCHARACTERIZED
CAI8024893.1
CAI8024895.1
CAI8024894.1
CAI8024896.1SODIUM/CALCIUM EXCHANGER
CAI8024897.1SODIUM/CALCIUM EXCHANGER
CAI8024898.1
CAI8024899.1-
CAI8024900.1-
CAI8024903.1PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR
CAI8024902.1PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR
CAI8024901.1PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR
CAI8024904.1DC12-RELATED
CAI8024905.1OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G02870)
CAI8024906.1TETRATRICOPEPTIDE REPEAT PROTEIN 6
CAI8024907.1HYDROXYPYRUVATE ISOMERASE
CAI8024908.1FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC
CAI8024909.1
CAI8024910.1UBIQUITIN-ACTIVATING ENZYME E1
CAI8024911.1SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER
CAI8024912.1AMINOTRANSFERASE
CAI8024914.1SUGAR NUCLEOTIDE EPIMERASE RELATED
CAI8024913.1SUGAR NUCLEOTIDE EPIMERASE RELATED
CAI8024915.1SENSOR HISTIDINE KINASE
CAI8024916.1
CAI8024917.1RIBONUCLEASE
CAI8024918.150S RIBOSOMAL PROTEIN L21
CAI8024919.150S RIBOSOMAL PROTEIN L21
CAI8024920.1RIBOSOMAL PROTEIN L27
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