About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8025170.1MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
CAI8025172.1
CAI8025173.1SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
CAI8025174.1SI:CH211-189E2.2
CAI8025175.1
CAI8025178.1
CAI8025177.1UPF0041 BRAIN PROTEIN 44-RELATED
CAI8025176.1
CAI8025179.1
CAI8025182.1PROTEIN TFG
CAI8025181.1PROTEIN TFG
CAI8025180.1PROTEIN TFG
CAI8025183.1
CAI8025187.1DOPEY-RELATED
CAI8025186.1DOPEY-RELATED
CAI8025185.1DOPEY-RELATED
CAI8025184.1
CAI8025188.1
CAI8025189.1
CAI8025190.13-DEHYDROQUINATE SYNTHASE
CAI8025191.1
CAI8025192.1SHIKIMATE KINASE
CAI8025193.1METHYLMALONYL-COA EPIMERASE
CAI8025194.1PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER
CAI8025196.1
CAI8025195.1
CAI8025197.1HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER
CAI8025198.1
CAI8025199.1BARREL METAL-DEPENDENT HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G16240)-RELATED
CAI8025200.1DISULFIDE OXIDOREDUCTASE
CAI8025207.1ANKYRIN REPEAT CONTAINING
CAI8025205.1MOLTING PROTEIN MLT-4
CAI8025206.1ANKYRIN REPEAT PROTEIN
CAI8025204.1MYOTROPHIN
CAI8025203.1ANKYRIN REPEAT PROTEIN
CAI8025202.1ANKYRIN REPEAT PROTEIN
CAI8025201.1SI:CH211-189E2.2
CAI8025209.1
CAI8025208.1
CAI8025210.1
CAI8025211.1
CAI8025212.1
CAI8025213.1
CAI8025214.1
CAI8025215.1ANAPHASE-PROMOTING COMPLEX SUBUNIT 5
CAI8025216.1ANAPHASE-PROMOTING COMPLEX SUBUNIT 5
CAI8025217.1
CAI8025218.1
CAI8025219.1METHYLMALONYL-COA MUTASE
CAI8025223.1EGF-LIKE-DOMAIN, MULTIPLE 7, 8
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