About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8025320.1LIPOCALIN-1 INTERACTING MEMBRANE RECEPTOR LIMR
CAI8025322.1GLUCOSE-6-PHOSPHATASE
CAI8025326.1TRANSCRIPTION INTERMEDIARY FACTOR
CAI8025325.1TRANSCRIPTION INTERMEDIARY FACTOR
CAI8025327.1TRANSCRIPTION INTERMEDIARY FACTOR
CAI8025324.1TRANSCRIPTION INTERMEDIARY FACTOR
CAI8025323.1TRANSCRIPTION INTERMEDIARY FACTOR
CAI8025328.1TRANSCRIPTION INTERMEDIARY FACTOR
CAI8025329.1TRANSCRIPTION INTERMEDIARY FACTOR
CAI8025330.1TRANSCRIPTION INTERMEDIARY FACTOR
CAI8025331.1TRANSCRIPTION INTERMEDIARY FACTOR
CAI8025334.1
CAI8025332.1
CAI8025333.1
CAI8025335.1
CAI8025336.1
CAI8025337.1STEROL DESATURASE
CAI8025339.1DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT
CAI8025341.1DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT
CAI8025340.1DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT
CAI8025338.1DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT
CAI8025342.1DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT
CAI8025344.1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
CAI8025343.1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
CAI8025345.1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
CAI8025346.1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
CAI8025347.1FI17866P1
CAI8025350.1FI17866P1
CAI8025348.1FI17866P1
CAI8025351.1FI17866P1
CAI8025352.1FI17866P1
CAI8025349.1FI17866P1
CAI8025354.1FI17866P1
CAI8025353.1
CAI8025355.1FI17866P1
CAI8025357.1
CAI8025358.1
CAI8025359.1
CAI8025360.1
CAI8025361.1
CAI8025356.1
CAI8025362.1SELENOPROTEIN O
CAI8025363.1ANKYRIN REPEAT FAMILY A
CAI8025364.1
CAI8025365.1
CAI8025366.1
CAI8025367.1
CAI8025368.1
CAI8025369.1
CAI8025370.1
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