About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8025274.1ANKYRIN REPEAT AND DEATH DOMAIN-CONTAINING PROTEIN
CAI8025273.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
CAI8025277.1MYOTROPHIN
CAI8025276.1MYOTROPHIN
CAI8025275.1ANKYRIN REPEAT PROTEIN
CAI8025272.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 61
CAI8025271.1ANKYRIN REPEAT PROTEIN
CAI8025278.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
CAI8025279.1
CAI8025280.1DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL
CAI8025281.1THROMBOSPONDIN
CAI8025282.1THROMBOSPONDIN
CAI8025284.1SACSIN
CAI8025283.1SACSIN
CAI8025285.1
CAI8025286.1
CAI8025288.1AATF PROTEIN APOPTOSIS ANTAGONIZING TRANSCRIPTION FACTOR
CAI8025287.1AATF PROTEIN APOPTOSIS ANTAGONIZING TRANSCRIPTION FACTOR
CAI8025289.1AATF PROTEIN APOPTOSIS ANTAGONIZING TRANSCRIPTION FACTOR
CAI8025294.1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
CAI8025295.1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
CAI8025293.1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
CAI8025292.1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
CAI8025291.1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
CAI8025290.1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
CAI8025296.1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
CAI8025297.1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
CAI8025298.1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
CAI8025299.1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
CAI8025300.1
CAI8025301.1
CAI8025303.1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
CAI8025302.1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
CAI8025304.1
CAI8025305.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8025306.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8025307.1BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR
CAI8025308.1BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR
CAI8025309.1BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR
CAI8025310.1LASP
CAI8025311.1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
CAI8025312.1MIR-INTERACTING SAPOSIN-LIKE PROTEIN
CAI8025313.126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4
CAI8025314.1
CAI8025315.1CYCLIN
CAI8025316.1SKICH DOMAIN-CONTAINING PROTEIN
CAI8025318.1
CAI8025317.1
CAI8025319.1
CAI8025321.1LIPOCALIN-1 INTERACTING MEMBRANE RECEPTOR LIMR
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