Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_024713-T1 | |
LLU|FUN_024714-T1 | XANTHINE DEHYDROGENASE |
LLU|FUN_024715-T1 | |
LLU|FUN_024716-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_024717-T1 | XANTHINE DEHYDROGENASE |
LLU|FUN_024718-T1 | |
LLU|FUN_024719-T1 | XANTHINE DEHYDROGENASE |
LLU|FUN_024720-T1 | |
LLU|FUN_024721-T1 | XANTHINE DEHYDROGENASE |
LLU|FUN_024722-T1 | METHYLTRANSFERASE-LIKE PROTEIN 24 |
LLU|FUN_024723-T1 | XANTHINE DEHYDROGENASE |
LLU|FUN_024724-T1 | |
LLU|FUN_024725-T1 | XANTHINE DEHYDROGENASE |
LLU|FUN_024726-T1 | |
LLU|FUN_024727-T1 | |
LLU|FUN_024728-T1 | L1 TRANSPOSABLE ELEMENT-RELATED |
LLU|FUN_024729-T1 | XANTHINE DEHYDROGENASE |
LLU|FUN_024730-T1 | XANTHINE DEHYDROGENASE |
LLU|FUN_024731-T1 | |
LLU|FUN_024732-T1 | |
LLU|FUN_024733-T1 | OS06G0651300 PROTEIN-RELATED |
LLU|FUN_024734-T1 | |
LLU|FUN_024735-T1 | |
LLU|FUN_024736-T1 | |
LLU|FUN_024737-T1 | |
LLU|FUN_024738-T1 | |
LLU|FUN_024739-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
LLU|FUN_024740-T1 | PA14 DOMAIN-CONTAINING PROTEIN |
LLU|FUN_024741-T1 | |
LLU|FUN_024742-T1 | |
LLU|FUN_024743-T1 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_024744-T1 | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA |
LLU|FUN_024745-T1 | 40S RIBOSOMAL PROTEIN S3A |
LLU|FUN_024746-T1 | 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 |
LLU|FUN_024747-T1 | |
LLU|FUN_024748-T1 | NF-KAPPA B ACTIVATING PROTEIN |
LLU|FUN_024749-T1 | - |
LLU|FUN_024750-T1 | OS10G0105400 PROTEIN |
LLU|FUN_024751-T1 | VACUOLAR ATP SYNTHASE SUBUNIT G |
LLU|FUN_024752-T1 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
LLU|FUN_024753-T1 | CALICYLIN BINDING PROTEIN |
LLU|FUN_024754-T1 | |
LLU|FUN_024755-T1 | |
LLU|FUN_024756-T1 | SERINE/THREONINE-PROTEIN KINASE |
LLU|FUN_024757-T1 | NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOG |
LLU|FUN_024758-T1 | NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOG |
LLU|FUN_024759-T1 | |
LLU|FUN_024760-T1 | SARCOSINE DEHYDROGENASE-RELATED |
LLU|FUN_024761-T1 | ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEIN |
LLU|FUN_024762-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 16 |