Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_024463-T1 | ANOCTAMIN |
LLU|FUN_024464-T1 | ANOCTAMIN |
LLU|FUN_024465-T1 | |
LLU|FUN_024466-T1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
LLU|FUN_024467-T1 | |
LLU|FUN_024468-T1 | HCLS1-ASSOCIATED PROTEIN X-1 |
LLU|FUN_024469-T1 | GAMMA TUBULIN COMPLEX PROTEIN |
LLU|FUN_024470-T1 | |
LLU|FUN_024471-T1 | OS10G0105400 PROTEIN |
LLU|FUN_024472-T1 | ATR-INTERACTING PROTEIN |
LLU|FUN_024473-T1 | NADH-UBIQUINONE OXIDOREDUCTASE ESSS SUBUNIT, MITOCHONDRIAL PRECURSOR |
LLU|FUN_024474-T1 | |
LLU|FUN_024475-T1 | SERINE/THREONINE-PROTEIN KINASE |
LLU|FUN_024476-T1 | TRANSFERASE, PUTATIVE-RELATED |
LLU|FUN_024477-T1 | |
LLU|FUN_024478-T1 | |
LLU|FUN_024479-T1 | |
LLU|FUN_024480-T1 | |
LLU|FUN_024481-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
LLU|FUN_024482-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_024483-T1 | NOTCH LIGAND FAMILY MEMBER |
LLU|FUN_024484-T1 | |
LLU|FUN_024485-T1 | SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING |
LLU|FUN_024486-T1 | |
LLU|FUN_024487-T1 | |
LLU|FUN_024488-T1 | |
LLU|FUN_024489-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
LLU|FUN_024490-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
LLU|FUN_024491-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
LLU|FUN_024492-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
LLU|FUN_024493-T1 | ZINC FINGER PROTEIN |
LLU|FUN_024494-T1 | MADF DOMAIN TRANSCRIPTION FACTOR |
LLU|FUN_024495-T1 | |
LLU|FUN_024496-T1 | |
LLU|FUN_024497-T1 | DYNEIN INTERMEDIATE CHAIN |
LLU|FUN_024498-T1 | AP-5 COMPLEX SUBUNIT ZETA-1 |
LLU|FUN_024499-T1 | |
LLU|FUN_024500-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_024501-T1 | TRANSMEMBRANE CHANNEL-RELATED |
LLU|FUN_024502-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_024503-T1 | |
LLU|FUN_024504-T1 | |
LLU|FUN_024505-T1 | |
LLU|FUN_024506-T1 | |
LLU|FUN_024507-T1 | |
LLU|FUN_024508-T1 | |
LLU|FUN_024509-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
LLU|FUN_024510-T1 | |
LLU|FUN_024511-T1 | |
LLU|FUN_024512-T1 |