Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_024313-T1 | |
LLU|FUN_024314-T1 | KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY F MEMBER 2 |
LLU|FUN_024315-T1 | UNCHARACTERIZED |
LLU|FUN_024316-T1 | |
LLU|FUN_024317-T1 | HOMEOBOX PROTEIN PROSPERO/PROX-1/CEH-26 |
LLU|FUN_024318-T1 | HOMEOBOX PROTEIN PROSPERO/PROX-1/CEH-26 |
LLU|FUN_024319-T1 | |
LLU|FUN_024320-T1 | DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED |
LLU|FUN_024321-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 4 |
LLU|FUN_024322-T1 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
LLU|FUN_024323-T1 | |
LLU|FUN_024324-T1 | |
LLU|FUN_024325-T1 | |
LLU|FUN_024326-T1 | SECRETED MODULAR CALCIUM-BINDING PROTEIN |
LLU|FUN_024327-T1 | |
LLU|FUN_024328-T1 | |
LLU|FUN_024329-T1 | METAXIN RELATED |
LLU|FUN_024330-T1 | |
LLU|FUN_024331-T1 | BREAST CANCER METASTASIS-SUPPRESSOR 1 |
LLU|FUN_024332-T1 | |
LLU|FUN_024333-T1 | |
LLU|FUN_024334-T1 | |
LLU|FUN_024335-T1 | TRANSLATION INITIATION FACTOR-RELATED |
LLU|FUN_024336-T1 | BARRIER TO AUTOINTEGRATION FACTOR 2 |
LLU|FUN_024337-T1 | |
LLU|FUN_024338-T1 | BARRIER TO AUTOINTEGRATION FACTOR 2 |
LLU|FUN_024339-T1 | BARRIER TO AUTOINTEGRATION FACTOR 2 |
LLU|FUN_024340-T1 | BARRIER TO AUTOINTEGRATION FACTOR 2 |
LLU|FUN_024341-T1 | |
LLU|FUN_024342-T1 | |
LLU|FUN_024343-T1 | |
LLU|FUN_024344-T1 | |
LLU|FUN_024345-T1 | ARMADILLO-TYPE FOLD-RELATED |
LLU|FUN_024346-T1 | |
LLU|FUN_024347-T1 | |
LLU|FUN_024348-T1 | FUKUTIN RELATED PROTEIN |
LLU|FUN_024349-T1 | |
LLU|FUN_024350-T1 | |
LLU|FUN_024351-T1 | |
LLU|FUN_024352-T1 | |
LLU|FUN_024353-T1 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
LLU|FUN_024354-T1 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
LLU|FUN_024355-T1 | |
LLU|FUN_024356-T1 | |
LLU|FUN_024357-T1 | SPLICING FACTOR 3B, SUBUNIT 1-RELATED |
LLU|FUN_024358-T1 | SPERM PROTEIN HOMOLOG |
LLU|FUN_024359-T1 | SPERM PROTEIN HOMOLOG |
LLU|FUN_024360-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_024361-T1 | |
LLU|FUN_024362-T1 | HEPARAN SULFATE SULFOTRANSFERASE |