About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_024313-T1
LLU|FUN_024314-T1KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY F MEMBER 2
LLU|FUN_024315-T1UNCHARACTERIZED
LLU|FUN_024316-T1
LLU|FUN_024317-T1HOMEOBOX PROTEIN PROSPERO/PROX-1/CEH-26
LLU|FUN_024318-T1HOMEOBOX PROTEIN PROSPERO/PROX-1/CEH-26
LLU|FUN_024319-T1
LLU|FUN_024320-T1DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED
LLU|FUN_024321-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 4
LLU|FUN_024322-T1PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
LLU|FUN_024323-T1
LLU|FUN_024324-T1
LLU|FUN_024325-T1
LLU|FUN_024326-T1SECRETED MODULAR CALCIUM-BINDING PROTEIN
LLU|FUN_024327-T1
LLU|FUN_024328-T1
LLU|FUN_024329-T1METAXIN RELATED
LLU|FUN_024330-T1
LLU|FUN_024331-T1BREAST CANCER METASTASIS-SUPPRESSOR 1
LLU|FUN_024332-T1
LLU|FUN_024333-T1
LLU|FUN_024334-T1
LLU|FUN_024335-T1TRANSLATION INITIATION FACTOR-RELATED
LLU|FUN_024336-T1BARRIER TO AUTOINTEGRATION FACTOR 2
LLU|FUN_024337-T1
LLU|FUN_024338-T1BARRIER TO AUTOINTEGRATION FACTOR 2
LLU|FUN_024339-T1BARRIER TO AUTOINTEGRATION FACTOR 2
LLU|FUN_024340-T1BARRIER TO AUTOINTEGRATION FACTOR 2
LLU|FUN_024341-T1
LLU|FUN_024342-T1
LLU|FUN_024343-T1
LLU|FUN_024344-T1
LLU|FUN_024345-T1ARMADILLO-TYPE FOLD-RELATED
LLU|FUN_024346-T1
LLU|FUN_024347-T1
LLU|FUN_024348-T1FUKUTIN RELATED PROTEIN
LLU|FUN_024349-T1
LLU|FUN_024350-T1
LLU|FUN_024351-T1
LLU|FUN_024352-T1
LLU|FUN_024353-T1PEPTIDOGLYCAN RECOGNITION PROTEIN
LLU|FUN_024354-T1PEPTIDOGLYCAN RECOGNITION PROTEIN
LLU|FUN_024355-T1
LLU|FUN_024356-T1
LLU|FUN_024357-T1SPLICING FACTOR 3B, SUBUNIT 1-RELATED
LLU|FUN_024358-T1SPERM PROTEIN HOMOLOG
LLU|FUN_024359-T1SPERM PROTEIN HOMOLOG
LLU|FUN_024360-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
LLU|FUN_024361-T1
LLU|FUN_024362-T1HEPARAN SULFATE SULFOTRANSFERASE
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