Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_53462-0.8 | |
| Bpl_scaf_5347-0.12 | TETRASPANIN |
| Bpl_scaf_5347-0.13 | ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL |
| Bpl_scaf_5347-0.22 | |
| Bpl_scaf_5347-0.23 | ABL INTERACTOR FAMILY MEMBER |
| Bpl_scaf_53475-0.13 | ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE |
| Bpl_scaf_53475-0.17 | OVOCHYMASE-RELATED |
| Bpl_scaf_53484-0.0 | |
| Bpl_scaf_53484-0.17 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| Bpl_scaf_53484-0.18 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| Bpl_scaf_535-0.1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_535-0.6 | LEUCOKININ RECEPTOR-RELATED |
| Bpl_scaf_535-1.1 | |
| Bpl_scaf_535-1.4 | SOLUTE CARRIER FAMILY 39 |
| Bpl_scaf_53500-0.19 | |
| Bpl_scaf_53500-0.23 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_53516-0.10 | NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_53516-0.11 | LD41958P |
| Bpl_scaf_53516-0.16 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
| Bpl_scaf_53516-0.21 | LD41958P |
| Bpl_scaf_53516-0.5 | HELIX LOOP HELIX PROTEIN 21-RELATED |
| Bpl_scaf_53521-0.14 | NONSYNDROMIC HEARING IMPAIRMENT PROTEIN |
| Bpl_scaf_53521-0.19 | |
| Bpl_scaf_53531-0.10 | METHYLTRANSFERASE, FKBM FAMILY PROTEIN |
| Bpl_scaf_53531-0.16 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| Bpl_scaf_53531-0.19 | LEUCINE AMINOPEPTIDASE-RELATED |
| Bpl_scaf_53531-0.20 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| Bpl_scaf_53531-0.35 | |
| Bpl_scaf_53531-0.40 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
| Bpl_scaf_53538-0.11 | |
| Bpl_scaf_53538-0.12 | CADHERIN-23 |
| Bpl_scaf_53538-0.13 | FAT ATYPICAL CADHERIN-RELATED |
| Bpl_scaf_53538-0.5 | CADHERIN-87A |
| Bpl_scaf_53547-0.20 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| Bpl_scaf_53547-0.7 | TRANSLATION FACTOR |
| Bpl_scaf_53547-0.8 | ANNEXIN |
| Bpl_scaf_53547-1.15 | AP COMPLEX SUBUNIT MU |
| Bpl_scaf_53547-1.16 | AP COMPLEX SUBUNIT MU |
| Bpl_scaf_53547-1.17 | OXIDATIVE STRESS-RESPONSE SERINE-RICH PROTEIN 1 |
| Bpl_scaf_53547-1.18 | |
| Bpl_scaf_53547-1.4 | |
| Bpl_scaf_53547-2.7 | ANKYRIN REPEAT PROTEIN |
| Bpl_scaf_53547-2.8 | |
| Bpl_scaf_53547-3.1 | UNCHARACTERIZED |
| Bpl_scaf_53547-7.5 | |
| Bpl_scaf_53547-7.6 | CADHERIN-87A |
| Bpl_scaf_53551-0.0 | |
| Bpl_scaf_53551-0.14 | |
| Bpl_scaf_53551-0.2 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_53551-0.50 |
